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@sankaranlab

Sankaran Lab

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  1. SCAVENGE SCAVENGE Public

    SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

    R 83 34

  2. mecom_var mecom_var Public

    HTML 25 27

  3. mito-genotyping mito-genotyping Public

    Repo for scripts for Ludwig et al mtDNA genotyping

    R 16 11

  4. redeemR redeemR Public

    Forked from chenweng1991/redeemR

    R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

    Jupyter Notebook 6

  5. mpn-gwas mpn-gwas Public

    Analysis repository for MPN GWAS manuscript

    R 4 3

  6. SCAVENGE-reproducibility SCAVENGE-reproducibility Public

    Repository for processed data and scripts for Yu et al. SCAVENGE paper bioRxiv

    R 4 1

Repositories

Showing 10 of 16 repositories
  • perturb_multiome Public

    Code to analyze Perturb-multiome experiments

    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Feb 12, 2025
  • redeem_reproducibility Public Forked from chenweng1991/redeem_reproducibility

    Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

    Jupyter Notebook 3 1 0 0 Updated Jan 22, 2024
  • redeemR Public Forked from chenweng1991/redeemR

    R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

    Jupyter Notebook 6 MIT 5 0 0 Updated Jan 22, 2024
  • redeemV Public Forked from chenweng1991/redeemV
    Jupyter Notebook 3 4 0 0 Updated Jan 22, 2024
  • SCAVENGE Public

    SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

    R 83 GPL-3.0 34 6 (1 issue needs help) 1 Updated Sep 1, 2023
  • hematopoiesis_be_screens Public

    Repo for scripts for Martin-Rufino et al. hematopoiesis base editor screens

    1 0 0 0 Updated Aug 14, 2023
  • mecom_var Public
    HTML 25 27 0 0 Updated Jan 23, 2023
  • SCAVENGE-reproducibility Public

    Repository for processed data and scripts for Yu et al. SCAVENGE paper bioRxiv

    R 4 GPL-2.0 1 0 0 Updated Jun 8, 2022
  • scd-chip Public

    Information accompanying Liggett et al. 2021

    1 MIT 0 0 0 Updated Jan 24, 2022
  • R 0 0 0 0 Updated Feb 1, 2021

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