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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 50 19

  2. public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  3. public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 41 repositories
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 50 GPL-3.0 19 43 6 Updated Apr 24, 2025
  • utilities Public

    A collection of general utility scripts

    Python 1 AGPL-3.0 0 0 1 Updated Apr 24, 2025
  • theiagen_docker_builds Public
    Dockerfile 3 GPL-3.0 0 1 1 Updated Apr 24, 2025
  • Mid-Atlantic-Docker4PH-2025 Public

    Resource for Mid-Atlantic's Docker for Public Health Bioinformatics 2025 Training Event

    Dockerfile 0 1 0 4 Updated Apr 22, 2025
  • mercury Public

    Mercury prepares and formats metadata for submission to national & international genomic databases.

    Python 4 GPL-3.0 0 0 1 Updated Apr 17, 2025
  • NE-PGCOE-Support Public

    Theiagen support for NorthEast Pathogen Genomic Center of Excellence efforts

    0 0 0 0 Updated Apr 16, 2025
  • tbp-parser Public

    A TBProfiler output parser used to classify the severity of Mycobacterium tuberculosis mutations.

    Python 5 GPL-3.0 0 0 0 Updated Apr 14, 2025
  • mycosnp-wdl Public

    A WDL wrapper of CDCGov/mycosnp-nf for Terra.bio

    WDL 2 Apache-2.0 0 1 0 Updated Apr 8, 2025
  • theiaphylo Public

    A collection of python-based phylogenetic analysis and comparison tools

    Python 0 GPL-3.0 0 0 0 Updated Apr 3, 2025
  • RefNAAP-wdl Public

    WDL wrapper around https://github.com/jiangweiyao/RefNAAP

    HTML 0 Apache-2.0 0 2 0 Updated Apr 3, 2025
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