Bailey Lab
- 16 followers
- Providence, RI
- http://www.baileylab.org/
- @baileygenomics
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Repositories
- miplicorn Public
A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.
- SeekDeep Public
Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
- MIPTools Public
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
- MIPWrangler Public
Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results
- compilerProfiler Public
C++ library with an aligner to test different compiler speeds with different optimizations
- map_fastqs_snakemake Public
a snakemake pipeline for mapping fastq entries to a bowtie2 indexed reference genome
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- haplotype_variant_calling Public
uses Nick Hathaway's variantCallOnSeqAndProtein script to call variants on vcf files and generate prevalences and amino acid calls
- seekdeep_prevalences Public
converts amino acid counts files into miptools formatted counts that are suitable for prevalence estimates
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