[BUG]: `test_cross_version_persist.py` flakes with `ColumnNotFound("bool_value")` in CI

We first saw this in March 2025. It seemed to start happening much more frequently after https://github.com/chroma-core/chroma/pull/4225 was merged. 

I have not been able to reproduce it locally. An example failure in CI: https://github.com/chroma-core/chroma/actions/runs/14389069935/job/40351574788