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count_cell_types default parameters issue

Status: Open.

#236 In dmcable/spacexr;

· leealj opened on Apr 28, 2025

graph output spot size

Status: Open.

#235 In dmcable/spacexr;

· chrkuo opened on Apr 3, 2025

RCTD reference choice

Status: Open.

#234 In dmcable/spacexr;

· Chelsea-yy opened on Mar 10, 2025

Drop cell type in reference

Status: Open.

#233 In dmcable/spacexr;

· GCAT01 opened on Mar 3, 2025

Is there a function that can directly run CSIDE for non-RCTD objects?

Status: Open.

#232 In dmcable/spacexr;

· Santanevrgivup opened on Feb 24, 2025

Post-Processing Cell Annotation of Doublets

Status: Open.

#231 In dmcable/spacexr;

· dblevenson opened on Feb 17, 2025

How to choose the best mode multi or full?

Status: Open.

#230 In dmcable/spacexr;

· vagm110901 opened on Feb 13, 2025

get_de_genes: At least 90% of genes do not match between the SpatialRNA and Reference objects.

Status: Open.

#229 In dmcable/spacexr;

· nasimbio opened on Jan 29, 2025

RCTD for bulk to sc devonvolution

Status: Open.

#228 In dmcable/spacexr;

· li-xuyang28 opened on Jan 27, 2025

Error in run.RCTD(), could not find function "solveIRWLS.weights"

Status: Open.

#227 In dmcable/spacexr;

· luoyufei opened on Jan 24, 2025

Encountered infinite loop while running run.RCTD()

Status: Open.

#226 In dmcable/spacexr;

· gaohaohoa opened on Jan 19, 2025

Strategy needed: RCTD deconvolution for large-scale mouse liver spatial transcriptomics data (99,894 spots)

Status: Open.

#225 In dmcable/spacexr;

· Lao-Tz opened on Dec 12, 2024