Repositories list

• systemPipeShiny

  Public
  A Shiny framework for workflow management and data visualization

  bioconductorbioconductor-packagesystempiper+ 3rshinydata-visualization

  R

  •6•34•0•0•Updated May 20, 2025May 20, 2025

• spsDemo

  Public
  SPS demo source code

  shiny

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 12, 2025Apr 12, 2025

• systemPipeRdata

  Public
  active develop fork of systemPipeRdata, for stable versions use https://github.com/tgirke/systemPipeRdata

  TeX

  •8•0•0•0•Updated Oct 12, 2024Oct 12, 2024

• systemPipeR.github.io

  Public
  systemPipe Workflow Environment

  bioconductorbioconductor-packagesystempiper-workflows+ 2systempipeshinysystempiper

  HTML

  •

  Apache License 2.0

  •0•4•0•3•Updated Jul 23, 2024Jul 23, 2024

• SPpolyriboseq

  Public
  Workflow Template

  developmentsystempiper-workflowssystempiper

  Shell

  •0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPmirnaseq

  Public
  Workflow Template

  workflowdevelopmentsystempiper-workflows+ 2systempipermirna-seq

  TeX

  •0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPmethylseq

  Public
  Workflow Template

  developmentsystempiper-workflowssystempiper

  TeX

  •1•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPmetatrans

  Public
  Workflow Template

  developmentworkflowssystempiper-workflows+ 1systempiper

  Shell

  •1•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPhic

  Public
  Workflow Template

  developmentworkflowssystempiper-workflows+ 1systempiper

  Shell

  •0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPdenovo

  Public
  Workflow Template

  developmentdenovo-assemblysystempiper-workflows+ 1systempiper

  TeX

  •1•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPclipseq

  Public
  Workflow Template

  developmentsystempiper-workflowssystempiper

  TeX

  •1•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• SPatacseq

  Public
  Workflow Template

  workflowdevelopmentanalysis-pipeline+ 3atac-seq-pipelinesystempiper-workflowssystempiper

  TeX

  •0•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• systemPipeR

  Public
  active develop fork for systemPipeR, for stable versions use https://github.com/tgirke/systemPipeR

  R

  •38•2•0•0•Updated Jul 14, 2023Jul 14, 2023

• systemPipeWorkshop2021

  Public
  workflowbioinformaticsr

  Common Workflow Language

  •

  MIT License

  •2•2•0•0•Updated Nov 4, 2022Nov 4, 2022

• systempipe_docker

  Public
  Dockerfile

  •

  Artistic License 2.0

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• systemPipeTools

  Public
  R

  •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• cwl_collection

  Public
  CWL CommandLineTool and Workflow descriptions for a variety of applications

  Common Workflow Language

  •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• .github

  Public
  0•0•0•0•Updated Dec 8, 2021Dec 8, 2021