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79 Open 487 Closed
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Issues list

Integration Testing CI Test Failure on python 3.11
#1010 opened Jun 18, 2025 by scverse-bot
Function to subset the entire spatialdata object enhancement ✨ New feature or request squidpy2.0 Everything releated to a Squidpy 2.0 release
#1007 opened May 26, 2025 by timtreis
1
@selmanozleyen
6
Ligrec convert mouse genome to human?
#1003 opened May 22, 2025 by RunyuXia
Integration Testing CI Test Failure on python 3.12
#1001 opened May 19, 2025 by scverse-bot
Error for sq.pl.spatial_scatter() bug 🐛 Something isn't working plot 🌺 related to plotting question ❓ Further information is requested
#999 opened May 8, 2025 by mikijoyce
1
Leverage Pre-Existing Annotations for Analysis question ❓ Further information is requested
#998 opened May 7, 2025 by abadgerw
5
spatial_segment doesn't always work with custom palettes bug 🐛 Something isn't working plot 🌺 related to plotting
#996 opened May 1, 2025 by harrymueller
1
Run notebooks in CI doc Improvements or additions to documentation enhancement ✨ New feature or request
#993 opened Apr 24, 2025 by ilan-gold
@selmanozleyen
Expected width to be in interval error im.calculate_image_features bug 🐛 Something isn't working image 🔬
#989 opened Apr 11, 2025 by mjakobs
4
Change CellCharter name and default values
#977 opened Mar 24, 2025 by marcovarrone
1
1
ligrec producing 0s in the pvalue table plot 🌺 related to plotting
#968 opened Mar 6, 2025 by haiderabbas678
1
Question regarding the zscore matrix
#953 opened Feb 14, 2025 by Huimin721
understand centrality scores
#951 opened Feb 6, 2025 by z-spider
Error with delaunay=True
#946 opened Jan 24, 2025 by Thapeachydude
1
significance of same dots changes based on plotted clusters in sq.pl.ligrec
#945 opened Jan 24, 2025 by t-a-m-i
@selmanozleyen
1
Error in import squidpy: cannot import name 'SparseCSCView' from 'anndata._core.views'
#928 opened Dec 11, 2024 by diego-iac
1
Consider switching to TrustedPublishing for PyPI uploads
#927 opened Dec 10, 2024 by grst
Handling Multiple Cells Sharing the Same Coordinates in Squidpy Neighborhood Analysis
#925 opened Dec 7, 2024 by aboutfanfan
@giovp
Receptor-ligand analysis cannot be reproduced
#922 opened Dec 2, 2024 by Amberzhang66
@michalk8
[BUG] label harmonization across blocks
#918 opened Nov 27, 2024 by melonora
1
squidpy (non-graph) spatial statistics for multiple images
#917 opened Nov 26, 2024 by mezwick
@giovp
Numba njit warning (nopython is set for njit and is ignored)
#916 opened Nov 25, 2024 by BenCaiello
@michalk8
Delegate plots to spatialdata-plot enhancement ✨ New feature or request plot 🌺 related to plotting
#912 opened Nov 8, 2024 by LucaMarconato
@Sonja-Stockhaus
4
Add parameter to sliding_window to end up with windows of (approximately) same number of cells enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#908 opened Nov 4, 2024 by timtreis
2
Add SpaGFT-like method for identification of SVGs enhancement ✨ New feature or request graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#901 opened Oct 15, 2024 by timtreis
@LLehner
ProTip! Exclude everything labeled bug with -label:bug.