aws-parallel-cluster

Here are 3 public repositories matching this topic...

Daylily-Informatics / daylily-ephemeral-cluster

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

aws bioinformatics scalable ec2 ngs slurm budgeting bioinformatics-pipeline informatics scaling cwl wgs ephemeral genomic-data-analysis human-genome aws-parallelcluster snv-call giab aws-parallel-cluster

Updated Jul 2, 2025
Shell

Daylily-Informatics / snakemake-executor-plugin-pcluster-slurm-ref

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A Snakemake executor plugin for submitting jobs to a SLURM cluster

plugin aws snakemake slurm parallel-cluster snakemake-plugin pcluster aws-parallel-cluster

Updated Oct 21, 2024
Python

Daylily-Informatics / snakemake-executor-plugin-pcluster-slurm

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slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.

plugin aws snakemake sbatch slurm snakemake-plugin pcluster aws-parallel-cluster

Updated May 29, 2025
Python

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