A Python toolbox for quantitative, reproducible flow cytometry analysis
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Updated
Jun 26, 2025 - Python
A Python toolbox for quantitative, reproducible flow cytometry analysis
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
A Python library for reading and writing Flow Cytometry Standard (FCS) files
A data-centric flow/mass cytometry automated analysis framework
🧫 Read Flow Cytometry Standard (FCS) files in Julia
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Shiny Modules for visualizing flow cytometry data
A simple python plotting package for density and scatter plotting.
Tools for Imaging Flow Cytometry
An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry
Django-based Repository for Flow Cytometry Data
Image Processing tools for Imaging Flow Cytometry
Code used for computational detection of MRD in AML using flow cytometry data.
A small R package containing useful R functions for cytometry data for internal use.
This repository contains the code used in our benchmark of imputation tools for flow cytometry data.
R scripts to help with your flow cytometry analysis. Batch index export and overlays
TimeFlow: a density-driven pseudotime method for flow cytometry data analysis.
High throughput single-cell analysis pipeline with ML-powered adaptive k value thresholding for spot counting of Fluorescent in-situ Hybridisation (FISH) spots from Amnis true imaging flow cytometers. Ongoing development.
Data Challenge for microbial community flow cytometry
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