Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Haplotype-aware CNV analysis from single-cell RNA-seq

A minimalist tree plotting library using toyplot graphs

Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

A tool for exploring large trees in the browser

📚 a complete reference book for treeio, tidytree and ggtree packages

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

Interactive assembly and analysis of RAD-seq data sets

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

A fast and scalable phylogenetic tree viewer for microbiome data analysis

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Interface to Open Tree of Life API

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

all methods related to Enterobase

Framework for Metastatic And Clonal History INtegrative Analysis

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

Accurate, resource-frugal and deterministic DNA sequence classifier.

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

Functions for phylogenetic analyses