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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 250 57

  2. koza Public

    Data transformation framework for LinkML data models

    Python 53 5

  3. MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 17 4

  6. monarch-app Public

    Monarch Initiative website and API

    Python 24 7

Repositories

Showing 10 of 253 repositories
  • zfin-genotype-to-phenotype-ingest Public
    Python 0 MIT 0 0 0 Updated May 7, 2025
  • mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 250 CC-BY-4.0 57 405 (2 issues need help) 61 Updated May 6, 2025
  • oncopacket Public

    A package to convert cancer data to GA4GH phenopacket

    Jupyter Notebook 7 MIT 1 20 1 Updated May 6, 2025
  • monarch-phenologs Public
    Python 3 BSD-3-Clause 0 15 0 Updated May 6, 2025
  • monarch-app Public

    Monarch Initiative website and API

    Python 24 BSD-3-Clause 7 247 (3 issues need help) 14 Updated May 6, 2025
  • mic-ingest Public

    Ingest for Micronutrient Information Center using OntoGPT

    Python 3 BSD-3-Clause 0 2 0 Updated May 5, 2025
  • curategpt Public

    LLM-driven curation assist tool

    Jupyter Notebook 84 BSD-3-Clause 13 31 2 Updated May 5, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    Jupyter Notebook 7 3 243 (1 issue needs help) 8 Updated May 5, 2025
  • automaxoviewer Public

    automaxoviewer

    Java 2 GPL-3.0 0 0 0 Updated May 4, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    Jupyter Notebook 7 3 68 6 Updated May 4, 2025
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