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  1. reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Python 108 30

  2. CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 42 10

  3. scopen Public

    scOpen: single-cell open chromatin analysis via NMF modelling

    Python 26 4

  4. MOJITOO Public

    MOJITOO: a fast and universal method for integration of multimodal single cell data

    R 10 1

  5. sc2marker Public

    Surface Marker Detection Using Single Cell Data

    HTML 9 2

  6. CimpleG Public

    CimpleG, an R package to find (small) CpG signatures.

    R 6

Repositories

Showing 10 of 42 repositories
  • PILOT Public

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    Python 20 MIT 3 1 1 Updated Mar 24, 2025
  • Nichesphere Public
    Jupyter Notebook 1 0 0 0 Updated Mar 24, 2025
  • scrna_seurat_pipeline Public

    comprehensive analysis of single-cell transcriptomics data

    R 20 9 4 0 Updated Mar 20, 2025
  • CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 42 MIT 10 5 0 Updated Mar 19, 2025
  • pyCrossTalkeR Public
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 26, 2025
  • phlower Public

    Use hodge decomposition for trajectory analysis

    Python 4 AGPL-3.0 0 0 0 Updated Feb 26, 2025
  • LR2TF Public
    R 0 0 0 0 Updated Feb 11, 2025
  • PILOT-GM-VAE Public

    Patient-Level Analysis of Single Cell Disease Atlas with Optimal Transport of Gaussian Mixtures Variational Autoencoders

    Python 3 1 0 0 Updated Feb 11, 2025
  • sigurd Public

    Using single cell genotype data, the cells are annotated and analysed.

    R 8 0 0 0 Updated Feb 7, 2025
  • scACCorDiON Public

    Comparing Directed Weighted Graphs

    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 30, 2025

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