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Gao Lab

Bioinformatics and Computational Genomics

Popular repositories Loading

  1. GLUE GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 405 58

  2. Guideline-for-Computational-Biology-and-Bioinformatics Guideline-for-Computational-Biology-and-Bioinformatics Public

    332 95

  3. Cell_BLAST Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 91 13

  4. SLAT SLAT Public

    Spatial-Linked Alignment Tool

    Python 84 9

  5. CPC2_standalone CPC2_standalone Public

    Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

    Python 24 11

  6. PASSAGE PASSAGE Public

    Phenotype Associated Spatial Signature Analysis with Graph-based Embedding

    Jupyter Notebook 20 1

Repositories

Showing 10 of 31 repositories
  • DECIPHER Public

    DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data

    Python 11 MIT 0 0 0 Updated Mar 12, 2025
  • PASSAGE Public

    Phenotype Associated Spatial Signature Analysis with Graph-based Embedding

    Jupyter Notebook 20 MIT 1 0 0 Updated Mar 5, 2025
  • SVEN Public

    Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

    Python 6 1 1 0 Updated Jan 17, 2025
  • RA_prediction Public

    Model for RA prediction

    Python 0 0 0 0 Updated Jan 15, 2025
  • SLAT Public

    Spatial-Linked Alignment Tool

    Python 84 MIT 9 0 0 Updated Dec 20, 2024
  • SEERS Public
    Jupyter Notebook 2 0 0 0 Updated Dec 8, 2024
  • SPARKLE Public
    HTML 0 0 0 0 Updated Nov 26, 2024
  • R 0 0 0 0 Updated Sep 3, 2024
  • Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 91 MIT 13 7 0 Updated Jul 23, 2024
  • GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 405 MIT 58 18 2 Updated Feb 23, 2024

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