WritePlotfileToASCII.cpp

#include <fstream>
#include <iostream>

#include <AMReX_ParmParse.H>
#include <AMReX_PlotFileUtil.H>

using namespace std;
using namespace amrex;

static
void
PrintUsage (const char* progName)
{
    Print() << std::endl
            << "This utility reads in a single-level plotfile, copies it to " << std::endl
            << "a MultiFab with a single box, then writes out all the data in" << std::endl
            << "'i j k comp <value>' format to the screen, for each component one by one." << std::endl
            << "The optional flag [comp_in_line = 1] will plot data " << std::endl
            << "with the format (i,j,k) followed by all components in a row.  " << std::endl
            << "The user can modify this cpp file to write out on certain components," << std::endl
            << "coordinates, row/column formatting, etc." << std::endl << std::endl;

    Print() << "Usage:" << '\n';
    Print() << progName << " infile=inputFileName [comp_in_line = 1]" << '\n' << '\n';

    exit(1);
}

int
main (int   argc,
      char* argv[])
{
    amrex::Initialize(argc,argv);

    if (argc == 1) {
        PrintUsage(argv[0]);
    }

    // plotfile name
    std::string iFile;

    // read in parameters from inputs file
    ParmParse pp;

    // read in plotfile name
    pp.query("infile", iFile);
    if (iFile.empty())
        amrex::Abort("You must specify `infile'");

    int comp_in_line = 0;
    pp.query("comp_in_line", comp_in_line);

    // for the Header
    std::string Header = iFile;
    Header += "/Header";

    // open header
    ifstream x;
    x.open(Header.c_str(), ios::in);

    // read in first line of header
    string str;
    x >> str;

    // read in number of components from header
    int ncomp;
    x >> ncomp;

    // read in variable names from header
    for (int n=0; n<ncomp; ++n) {
        x >> str;
    }

    // read in dimensionality from header
    int dim;
    x >> dim;

    if (dim != AMREX_SPACEDIM) {
        Print() << "\nError: you are using a " << AMREX_SPACEDIM << "D build to open a "
                << dim << "D plotfile\n\n";
        Abort();
    }

    int lev = 0;

    do {

        if (lev > 9) {
            Abort("Utility only works for 10 levels of refinement or less");
        }

        // storage for the MultiFab
        MultiFab mf;

        std::string iFile_lev = iFile;

        std::string levX  = "/Level_"+to_string(lev)+"/Cell";
        std::string levXX = "/Level_0"+to_string(lev)+"/Cell";

        // now read in the plotfile data
        // check to see whether the user pointed to the plotfile base directory
        // or the data itself
        if (amrex::FileExists(iFile+levX+"_H")) {
            iFile_lev += levX;
        } else if (amrex::FileExists(iFile+levXX+"_H")) {
            iFile_lev += levXX;
        } else {
            break; // terminate while loop
        }

        // read in plotfile to MultiFab
        VisMF::Read(mf, iFile_lev);

        if (lev == 0) {
            ncomp = mf.nComp();
            Print() << "Number of components in the plotfile = " << ncomp << std::endl;
            Print() << "Nodality of plotfile = " << mf.ixType().toIntVect() << std::endl;
        }

        // get boxArray to compute number of grid points at the level
        BoxArray ba = mf.boxArray();
        Print() << "Number of grid points at level " << lev << " = " << ba.numPts() << std::endl;

        for ( MFIter mfi(mf,false); mfi.isValid(); ++mfi ) {

            const Box& bx = mfi.validbox();
            const auto lo = amrex::lbound(bx);
            const auto hi = amrex::ubound(bx);

            const Array4<Real>& mfdata = mf.array(mfi);

            if (comp_in_line == 1) {
                std::cout << mf[mfi];
            } else {
                for (auto n=0; n<ncomp; ++n) {
                for (auto k = lo.z; k <= hi.z; ++k) {
                for (auto j = lo.y; j <= hi.y; ++j) {
                for (auto i = lo.x; i <= hi.x; ++i) {
                    std::cout << i << " " << j << " " << k << " " << n << " " << mfdata(i,j,k,n) << "\n";
                }
                }
                }
                }
            }
        } // end MFIter

        // proceed to next level of refinement
        ++lev;

    } while(true);

}