eval_rcmvsnet_dtu.py

import argparse, os, time, sys, gc, cv2
import torch
import torch.nn as nn
import torch.nn.parallel
import torch.backends.cudnn as cudnn
from torch.utils.data import DataLoader
import torch.nn.functional as F
from models.casmvsnet import *
import numpy as np
from datasets import find_dataset_def
from models import *
from utils import *
from datasets.data_io import read_pfm, save_pfm
from plyfile import PlyData, PlyElement
from PIL import Image
# from gipuma import gipuma_filter
from torchvision import transforms
import matplotlib.pyplot as plt
from multiprocessing import Pool
from functools import partial
import signal

cudnn.benchmark = True

parser = argparse.ArgumentParser(description='Predict depth, filter, and fuse')
parser.add_argument('--model', default='mvsnet', help='select model')

parser.add_argument('--dataset', default='dtu_test', help='select dataset')
parser.add_argument('--testpath', default="/cluster/51/dichang/datasets/mvsnet/dtu_test",help='test datapath')
parser.add_argument('--testpath_single_scene', help='testing data path for single scene')
parser.add_argument('--testlist', default='./lists/dtu/test.txt',help='test list')

parser.add_argument('--batch_size', type=int, default=1, help='testing batch size')
parser.add_argument('--numdepth', type=int, default=192, help='the number of depth values')

parser.add_argument('--loadckpt', default='./pretrain/model_000014_cas.ckpt', help='load a specific checkpoint')
parser.add_argument('--outdir', default='./dtu_exp', help='output dir')
parser.add_argument('--display', action='store_true', help='display depth images and masks')

parser.add_argument('--share_cr', action='store_true', help='whether share the cost volume regularization')

parser.add_argument('--ndepths', type=str, default="48,32,8", help='ndepths')
parser.add_argument('--depth_inter_r', type=str, default="4,2,1", help='depth_intervals_ratio')
parser.add_argument('--cr_base_chs', type=str, default="8,8,8", help='cost regularization base channels')
parser.add_argument('--grad_method', type=str, default="detach", choices=["detach", "undetach"], help='grad method')

parser.add_argument('--interval_scale', type=float, default=1.06, help='the depth interval scale')
parser.add_argument('--num_view', type=int, default=5, help='num of view')
parser.add_argument('--max_h', type=int, default=1200, help='testing max h')
parser.add_argument('--max_w', type=int, default=1600, help='testing max w')
parser.add_argument('--fix_res', action='store_true', help='scene all using same res')

parser.add_argument('--num_worker', type=int, default=4, help='depth_filer worker')
parser.add_argument('--save_freq', type=int, default=20, help='save freq of local pcd')


#filter
parser.add_argument('--prob_thres', type=float, default=0.8, help='prob confidence')
parser.add_argument('--num_consistency', type=int, default=3, help='threshold of num view')
parser.add_argument('--img_dist_thres', type=float, default=0.5, help='hyper1')
parser.add_argument('--depth_thres', type=float, default=0.01, help='hyper2')



parser.add_argument('--no_test',action='store_true',help='fusion without testing')
parser.add_argument('--no_filter',action='store_true',help='testing without fusion')
# os environment
parser.add_argument('--true_gpu',default="1",help='using true gpu')
parser.add_argument('--stage', default=False, help='train stage by stage')




parser.add_argument('--using_apex', action='store_true', help='using apex, need to install apex')
parser.add_argument('--sync_bn', action='store_true',help='enabling apex sync BN.')

# parse arguments and check
args = parser.parse_args()
print("argv:", sys.argv[1:])
print_args(args)
if args.testpath_single_scene:
    args.testpath = os.path.dirname(args.testpath_single_scene)

num_stage = len([int(nd) for nd in args.ndepths.split(",") if nd])

Interval_Scale = args.interval_scale
print("***********Interval_Scale**********\n", Interval_Scale)


# read intrinsics and extrinsics
def read_camera_parameters(filename):
    with open(filename) as f:
        lines = f.readlines()
        lines = [line.rstrip() for line in lines]
    # extrinsics: line [1,5), 4x4 matrix
    extrinsics = np.fromstring(' '.join(lines[1:5]), dtype=np.float32, sep=' ').reshape((4, 4))
    # intrinsics: line [7-10), 3x3 matrix
    intrinsics = np.fromstring(' '.join(lines[7:10]), dtype=np.float32, sep=' ').reshape((3, 3))
    # TODO: assume the feature is 1/4 of the original image size
    # intrinsics[:2, :] /= 4
    return intrinsics, extrinsics


# read an image
def read_img(filename):
    img = Image.open(filename)
    # scale 0~255 to 0~1
    np_img = np.array(img, dtype=np.float32) / 255.
    return np_img


# read a binary mask
def read_mask(filename):
    return read_img(filename) > 0.5


# save a binary mask
def save_mask(filename, mask):
    assert mask.dtype == np.bool
    mask = mask.astype(np.uint8) * 255
    Image.fromarray(mask).save(filename)


# read a pair file, [(ref_view1, [src_view1-1, ...]), (ref_view2, [src_view2-1, ...]), ...]
def read_pair_file(filename):
    data = []
    with open(filename) as f:
        num_viewpoint = int(f.readline())
        # 49 viewpoints
        for view_idx in range(num_viewpoint):
            ref_view = int(f.readline().rstrip())
            src_views = [int(x) for x in f.readline().rstrip().split()[1::2]]
            if len(src_views) > 0:
                data.append((ref_view, src_views))
    return data

def write_cam(file, cam):
    f = open(file, "w")
    f.write('extrinsic\n')
    for i in range(0, 4):
        for j in range(0, 4):
            f.write(str(cam[0][i][j]) + ' ')
        f.write('\n')
    f.write('\n')

    f.write('intrinsic\n')
    for i in range(0, 3):
        for j in range(0, 3):
            f.write(str(cam[1][i][j]) + ' ')
        f.write('\n')

    f.write('\n' + str(cam[1][3][0]) + ' ' + str(cam[1][3][1]) + ' ' + str(cam[1][3][2]) + ' ' + str(cam[1][3][3]) + '\n')

    f.close()

def save_depth(testlist):

    for scene in testlist:
        save_scene_depth([scene])
    
    # save_scene_depth(testlist)

# run CasMVS model to save depth maps and confidence maps
def save_scene_depth(testlist):
    inv_normalize = transforms.Normalize(
        mean=[-0.485/0.229, -0.456/0.224, -0.406/0.255],
        std=[1/0.229, 1/0.224, 1/0.255]
    )


    # dataset, dataloader
    MVSDataset = find_dataset_def(args.dataset)
    test_dataset = MVSDataset(args.testpath, testlist, "test", args.num_view, args.numdepth, Interval_Scale,
                              max_h=args.max_h, max_w=args.max_w, fix_res=args.fix_res)
    TestImgLoader = DataLoader(test_dataset, args.batch_size, shuffle=False, num_workers=1, drop_last=False)


    model = CascadeMVSNet_eval(refine=False, ndepths=[int(nd) for nd in args.ndepths.split(",") if nd],
                depth_interals_ratio=[float(d_i) for d_i in args.depth_inter_r.split(",") if d_i],
                share_cr=args.share_cr,
                cr_base_chs=[int(ch) for ch in args.cr_base_chs.split(",") if ch],
                grad_method=args.grad_method)

    # load checkpoint file specified by args.loadckpt
    print("loading model {}".format(args.loadckpt))
    state_dict = torch.load(args.loadckpt, map_location=torch.device("cpu"))
    model.load_state_dict(state_dict['model'], strict=True)
    model = nn.DataParallel(model)
    model.cuda()
    model.eval()

    with torch.no_grad():
        for batch_idx, sample in enumerate(TestImgLoader):
            sample_cuda = tocuda(sample)
            start_time = time.time()
            outputs = model(sample_cuda["imgs"], sample_cuda["proj_matrices"], sample_cuda["depth_values"])
            end_time = time.time()
            outputs = tensor2numpy(outputs)
            del sample_cuda
            filenames = sample["filename"]
            cams = sample["proj_matrices"]["stage{}".format(num_stage)].numpy()
            # imgs = sample["imgs"].numpy()
            imgs = sample["imgs"]
            depth_values=sample["depth_values"]
            depth_start,depth_end =depth_values[0][0],depth_values[0][-1]
            
            # print("sample[imgs]: {}".format(sample["imgs"].shape))
            # imgs = inv_normalize(sample["imgs"].squeeze()).unsqueeze(dim=0).numpy()
            # imgs = sample["imgs_raw"].numpy()
            print('Iter {}/{}, Time:{} Res:{}'.format(batch_idx, len(TestImgLoader), end_time - start_time, imgs[0].shape))

            # save depth maps and confidence maps
            for filename, cam, img, depth_est, photometric_confidence in zip(filenames, cams, imgs, \
                                                            outputs["depth"], outputs["photometric_confidence"]):
                img = img[0]  #ref view
                img = inv_normalize(img).numpy()
                cam = cam[0]  #ref cam
                
                depth_filename = os.path.join(args.outdir, filename.format('depth_est', '.pfm'))
                confidence_filename = os.path.join(args.outdir, filename.format('confidence', '.pfm'))
                confidence_img_filename = os.path.join(args.outdir, filename.format('confidence_map', '.jpg'))
                cam_filename = os.path.join(args.outdir, filename.format('cams', '_cam.txt'))
                img_filename = os.path.join(args.outdir, filename.format('images', '.jpg'))
                ply_filename = os.path.join(args.outdir, filename.format('ply_local', '.ply'))
                pred_depth_img_path = os.path.join(args.outdir,filename.format("depth_map",'.jpg'))
                
                
                os.makedirs(depth_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(confidence_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(confidence_img_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(cam_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(img_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(ply_filename.rsplit('/', 1)[0], exist_ok=True)
                os.makedirs(pred_depth_img_path.rsplit('/', 1)[0], exist_ok=True)
                
                #save depth maps
                save_pfm(depth_filename, depth_est)

                #save depth_image_map_rgb
                # pred_depth_img_path = os.path.join(args.outdir,filename.format("depth_map",'.jpg'))
                plt.imsave(pred_depth_img_path, depth_est, cmap="rainbow", vmin=depth_start, vmax=depth_end)
                
                confidence_min =np.min(photometric_confidence)
                confidence_max = np.max(photometric_confidence)
                #save confidence maps
                save_pfm(confidence_filename, photometric_confidence)
                plt.imsave(confidence_img_filename, photometric_confidence, cmap="rainbow",vmin=confidence_min,vmax=confidence_max)
                #save cams, img
                write_cam(cam_filename, cam)
                img = np.clip(np.transpose(img, (1, 2, 0)) * 255, 0, 255).astype(np.uint8)
                img_bgr = cv2.cvtColor(img, cv2.COLOR_RGB2BGR)
                cv2.imwrite(img_filename, img_bgr)

                # vis
                # print(photometric_confidence.mean(), photometric_confidence.min(), photometric_confidence.max())
                # import matplotlib.pyplot as plt
                # plt.subplot(1, 3, 1)
                # plt.imshow(img)
                # plt.subplot(1, 3, 2)
                # plt.imshow((depth_est - depth_est.min())/(depth_est.max() - depth_est.min()))
                # plt.subplot(1, 3, 3)
                # plt.imshow(photometric_confidence)
                # plt.show()

                if num_stage == 1:
                    downsample_img = cv2.resize(img, (int(img.shape[1] * 0.25), int(img.shape[0] * 0.25)))
                elif num_stage == 2:
                    downsample_img = cv2.resize(img, (int(img.shape[1] * 0.5), int(img.shape[0] * 0.5)))
                elif num_stage == 3:
                    downsample_img = img

                if batch_idx  == (len(TestImgLoader)-1):
                    generate_pointcloud(downsample_img, depth_est, ply_filename, cam[1, :3, :3])

    torch.cuda.empty_cache()
    gc.collect()


# project the reference point cloud into the source view, then project back
def reproject_with_depth(depth_ref, intrinsics_ref, extrinsics_ref, depth_src, intrinsics_src, extrinsics_src):
    width, height = depth_ref.shape[1], depth_ref.shape[0]
    ## step1. project reference pixels to the source view
    # reference view x, y
    x_ref, y_ref = np.meshgrid(np.arange(0, width), np.arange(0, height))
    x_ref, y_ref = x_ref.reshape([-1]), y_ref.reshape([-1])
    # reference 3D space
    xyz_ref = np.matmul(np.linalg.inv(intrinsics_ref),
                        np.vstack((x_ref, y_ref, np.ones_like(x_ref))) * depth_ref.reshape([-1]))
    # source 3D space
    xyz_src = np.matmul(np.matmul(extrinsics_src, np.linalg.inv(extrinsics_ref)),
                        np.vstack((xyz_ref, np.ones_like(x_ref))))[:3]
    # source view x, y
    K_xyz_src = np.matmul(intrinsics_src, xyz_src)
    xy_src = K_xyz_src[:2] / K_xyz_src[2:3]

    ## step2. reproject the source view points with source view depth estimation
    # find the depth estimation of the source view
    x_src = xy_src[0].reshape([height, width]).astype(np.float32)
    y_src = xy_src[1].reshape([height, width]).astype(np.float32)
    sampled_depth_src = cv2.remap(depth_src, x_src, y_src, interpolation=cv2.INTER_LINEAR)
    # mask = sampled_depth_src > 0

    # source 3D space
    # NOTE that we should use sampled source-view depth_here to project back
    xyz_src = np.matmul(np.linalg.inv(intrinsics_src),
                        np.vstack((xy_src, np.ones_like(x_ref))) * sampled_depth_src.reshape([-1]))
    # reference 3D space
    xyz_reprojected = np.matmul(np.matmul(extrinsics_ref, np.linalg.inv(extrinsics_src)),
                                np.vstack((xyz_src, np.ones_like(x_ref))))[:3]
    # source view x, y, depth
    depth_reprojected = xyz_reprojected[2].reshape([height, width]).astype(np.float32)
    K_xyz_reprojected = np.matmul(intrinsics_ref, xyz_reprojected)
    xy_reprojected = K_xyz_reprojected[:2] / K_xyz_reprojected[2:3]
    x_reprojected = xy_reprojected[0].reshape([height, width]).astype(np.float32)
    y_reprojected = xy_reprojected[1].reshape([height, width]).astype(np.float32)

    return depth_reprojected, x_reprojected, y_reprojected, x_src, y_src


def check_geometric_consistency(depth_ref, intrinsics_ref, extrinsics_ref, depth_src, intrinsics_src, extrinsics_src,img_dist_thresh, depth_thresh):
    width, height = depth_ref.shape[1], depth_ref.shape[0]
    x_ref, y_ref = np.meshgrid(np.arange(0, width), np.arange(0, height))
    depth_reprojected, x2d_reprojected, y2d_reprojected, x2d_src, y2d_src = reproject_with_depth(depth_ref, intrinsics_ref, extrinsics_ref,
                                                     depth_src, intrinsics_src, extrinsics_src)
    # check |p_reproj-p_1| < 1
    dist = np.sqrt((x2d_reprojected - x_ref) ** 2 + (y2d_reprojected - y_ref) ** 2)

    # check |d_reproj-d_1| / d_1 < 0.01
    depth_diff = np.abs(depth_reprojected - depth_ref)
    relative_depth_diff = depth_diff / depth_ref

    mask = np.logical_and(dist < img_dist_thresh , relative_depth_diff < depth_thresh)
    depth_reprojected[~mask] = 0

    return mask, depth_reprojected, x2d_src, y2d_src


def filter_depth(pair_folder, scan_folder, out_folder, plyfilename, prob_threshold, num_consistent, img_dist_thresh, depth_thresh):
    # the pair file
    pair_file = os.path.join(pair_folder, "pair.txt")
    # for the final point cloud
    vertexs = []
    vertex_colors = []

    pair_data = read_pair_file(pair_file)
    nviews = len(pair_data)

    # for each reference view and the corresponding source views
    for ref_view, src_views in pair_data:
        # src_views = src_views[:args.num_view]
        # load the camera parameters
        ref_intrinsics, ref_extrinsics = read_camera_parameters(
            os.path.join(scan_folder, 'cams/{:0>8}_cam.txt'.format(ref_view)))
        # load the reference image
        ref_img = read_img(os.path.join(scan_folder, 'images/{:0>8}.jpg'.format(ref_view)))
        # load the estimated depth of the reference view
        ref_depth_est = read_pfm(os.path.join(out_folder, 'depth_est/{:0>8}.pfm'.format(ref_view)))[0]
        # load the photometric mask of the reference view
        confidence = read_pfm(os.path.join(out_folder, 'confidence/{:0>8}.pfm'.format(ref_view)))[0]
        photo_mask = confidence > prob_threshold

        all_srcview_depth_ests = []
        all_srcview_x = []
        all_srcview_y = []
        all_srcview_geomask = []

        # compute the geometric mask
        geo_mask_sum = 0
        for src_view in src_views:
            # camera parameters of the source view
            src_intrinsics, src_extrinsics = read_camera_parameters(
                os.path.join(scan_folder, 'cams/{:0>8}_cam.txt'.format(src_view)))
            # the estimated depth of the source view
            src_depth_est = read_pfm(os.path.join(out_folder, 'depth_est/{:0>8}.pfm'.format(src_view)))[0]

            geo_mask, depth_reprojected, x2d_src, y2d_src = check_geometric_consistency(ref_depth_est, ref_intrinsics, ref_extrinsics,
                                                                      src_depth_est,
                                                                      src_intrinsics, src_extrinsics,img_dist_thresh=img_dist_thresh, depth_thresh=depth_thresh)
            geo_mask_sum += geo_mask.astype(np.int32)
            all_srcview_depth_ests.append(depth_reprojected)
            all_srcview_x.append(x2d_src)
            all_srcview_y.append(y2d_src)
            all_srcview_geomask.append(geo_mask)

        depth_est_averaged = (sum(all_srcview_depth_ests) + ref_depth_est) / (geo_mask_sum + 1)
        # at least 3 source views matched
        geo_mask = geo_mask_sum >= num_consistent
        final_mask = np.logical_and(photo_mask, geo_mask)

        os.makedirs(os.path.join(out_folder, "mask"), exist_ok=True)
        save_mask(os.path.join(out_folder, "mask/{:0>8}_photo.png".format(ref_view)), photo_mask)
        save_mask(os.path.join(out_folder, "mask/{:0>8}_geo.png".format(ref_view)), geo_mask)
        save_mask(os.path.join(out_folder, "mask/{:0>8}_final.png".format(ref_view)), final_mask)

        print("processing {}, ref-view{:0>2}, photo/geo/final-mask:{}/{}/{}".format(scan_folder, ref_view,
                                                                                    photo_mask.mean(),
                                                                                    geo_mask.mean(), final_mask.mean()))
        filtered_depth =  ref_depth_est * final_mask.astype(np.float32)
        os.makedirs(os.path.join(out_folder, "filtered_depth"), exist_ok=True)
        plt.imsave(os.path.join(out_folder, "filtered_depth/{:0>8}.jpg".format(ref_view)), filtered_depth, cmap="rainbow")
        if args.display:
            import cv2
            cv2.imshow('ref_img', ref_img[:, :, ::-1])
            cv2.imshow('ref_depth', ref_depth_est / 800)
            cv2.imshow('ref_depth * photo_mask', ref_depth_est * photo_mask.astype(np.float32) / 800)
            cv2.imshow('ref_depth * geo_mask', ref_depth_est * geo_mask.astype(np.float32) / 800)
            cv2.imshow('ref_depth * mask', ref_depth_est * final_mask.astype(np.float32) / 800)
            cv2.waitKey(0)

        height, width = depth_est_averaged.shape[:2]
        x, y = np.meshgrid(np.arange(0, width), np.arange(0, height))
        # valid_points = np.logical_and(final_mask, ~used_mask[ref_view])
        valid_points = final_mask
        print("valid_points", valid_points.mean())
        x, y, depth = x[valid_points], y[valid_points], depth_est_averaged[valid_points]
        #color = ref_img[1:-16:4, 1::4, :][valid_points]  # hardcoded for DTU dataset

        if num_stage == 1:
            color = ref_img[1::4, 1::4, :][valid_points]
        elif num_stage == 2:
            color = ref_img[1::2, 1::2, :][valid_points]
        elif num_stage == 3:
            color = ref_img[valid_points]

        xyz_ref = np.matmul(np.linalg.inv(ref_intrinsics),
                            np.vstack((x, y, np.ones_like(x))) * depth)
        xyz_world = np.matmul(np.linalg.inv(ref_extrinsics),
                              np.vstack((xyz_ref, np.ones_like(x))))[:3]
        vertexs.append(xyz_world.transpose((1, 0)))
        vertex_colors.append((color * 255).astype(np.uint8))

        # # set used_mask[ref_view]
        # used_mask[ref_view][...] = True
        # for idx, src_view in enumerate(src_views):
        #     src_mask = np.logical_and(final_mask, all_srcview_geomask[idx])
        #     src_y = all_srcview_y[idx].astype(np.int)
        #     src_x = all_srcview_x[idx].astype(np.int)
        #     used_mask[src_view][src_y[src_mask], src_x[src_mask]] = True

    vertexs = np.concatenate(vertexs, axis=0)
    vertex_colors = np.concatenate(vertex_colors, axis=0)
    vertexs = np.array([tuple(v) for v in vertexs], dtype=[('x', 'f4'), ('y', 'f4'), ('z', 'f4')])
    vertex_colors = np.array([tuple(v) for v in vertex_colors], dtype=[('red', 'u1'), ('green', 'u1'), ('blue', 'u1')])

    vertex_all = np.empty(len(vertexs), vertexs.dtype.descr + vertex_colors.dtype.descr)
    for prop in vertexs.dtype.names:
        vertex_all[prop] = vertexs[prop]
    for prop in vertex_colors.dtype.names:
        vertex_all[prop] = vertex_colors[prop]

    el = PlyElement.describe(vertex_all, 'vertex')
    PlyData([el]).write(plyfilename)
    print("saving the final model to", plyfilename)


def init_worker():
    '''
    Catch Ctrl+C signal to termiante workers
    '''
    signal.signal(signal.SIGINT, signal.SIG_IGN)


def pcd_filter_worker(scan):
    if args.testlist != "all":
        scan_id = int(scan[4:])
        save_name = 'mvsnet{:0>3}_l3.ply'.format(scan_id)
    else:
        save_name = '{}.ply'.format(scan)
    pair_folder = os.path.join(args.testpath, scan)
    scan_folder = os.path.join(args.outdir, scan)
    out_folder = os.path.join(args.outdir, scan)
    img_dist_thres = {
        '1': 0.5, 
        '4': 0.5, 
        '9': 0.5, 
        '10': 0.25, 
        '11': 0.75, 
        '12': 0.25,
        '13': 0.75, 
        '15': 0.5, 
        '23': 0.5, 
        '24': 0.5, 
        '29': 0.5, 
        '32': 0.5, 
        '33': 0.5, 
        '34': 0.25, 
        '48': 0.75, 
        '49': 0.5, 
        '62': 0.5, 
        '75': 0.25, 
        '77': 0.25, 
        '110': 0.25,     
        '114': 0.5, 
        '118': 0.75, 
    }
    filter_depth(pair_folder, scan_folder, out_folder, os.path.join(args.outdir, save_name), prob_threshold=args.prob_thres, num_consistent=args.num_consistency, img_dist_thresh=img_dist_thres[str(scan_id)], depth_thresh=args.depth_thres)


def pcd_filter(testlist, number_worker):

    partial_func = partial(pcd_filter_worker)

    p = Pool(number_worker, init_worker)
    try:
        p.map(partial_func, testlist)
    except KeyboardInterrupt:
        print("....\nCaught KeyboardInterrupt, terminating workers")
        p.terminate()
    else:
        p.close()
    p.join()

if __name__ == '__main__':
    os.environ["CUDA_VISIBLE_DEVICES"] = args.true_gpu
    if args.testlist != "all":
        with open(args.testlist) as f:
            content = f.readlines()
            testlist = [line.rstrip() for line in content]
    else:
        #for tanks & temples or eth3d or colmap
        testlist = [e for e in os.listdir(args.testpath) if os.path.isdir(os.path.join(args.testpath, e))] \
            if not args.testpath_single_scene else [os.path.basename(args.testpath_single_scene)]

    # step1. save all the depth maps and the masks in outputs directory
    if not args.no_test:
        save_depth(testlist)


    # step2. filter saved depth maps with photometric confidence maps and geometric constraints
    if not args.no_filter:
        pcd_filter(testlist, args.num_worker)