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<!DOCTYPE html>
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<title>Index — BioSimulators-pyNeuroML 0.0.16 documentation</title>
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<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#V"><strong>V</strong></a>
| <a href="#W"><strong>W</strong></a>
</div>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
biosimulators_pyneuroml
<ul>
<li><a href="source/biosimulators_opencor.html#module-biosimulators_pyneuroml">module</a>, <a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml">[1]</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.api
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.api.brian2
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.brian2">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.api.netpyne
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.netpyne">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.api.neuron
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.neuron">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.api.pyneuroml
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.pyneuroml">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.cli
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.cli.brian2
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.brian2">module</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
biosimulators_pyneuroml.cli.netpyne
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.netpyne">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.cli.neuron
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.neuron">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.cli.pyneuroml
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.pyneuroml">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.core
<ul>
<li><a href="source/biosimulators_opencor.html#module-biosimulators_pyneuroml.core">module</a>, <a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.core">[1]</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.data_model
<ul>
<li><a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.data_model">module</a>
</li>
</ul></li>
<li>
biosimulators_pyneuroml.utils
<ul>
<li><a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.utils">module</a>
</li>
</ul></li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.Simulator.brian2">brian2 (biosimulators_pyneuroml.data_model.Simulator attribute)</a>
<ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.Simulator.brian2">(biosimulators_pyneuroml.Simulator attribute)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.Simulator.brian2">[1]</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.cleanup">cleanup (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.compile_mods">compile_mods (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.exec_in_dir">exec_in_dir (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.exec_sed_doc">exec_sed_doc() (in module biosimulators_pyneuroml)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.exec_sed_doc">[1]</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.brian2.exec_sed_doc">(in module biosimulators_pyneuroml.api.brian2)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.netpyne.exec_sed_doc">(in module biosimulators_pyneuroml.api.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.neuron.exec_sed_doc">(in module biosimulators_pyneuroml.api.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.pyneuroml.exec_sed_doc">(in module biosimulators_pyneuroml.api.pyneuroml)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.core.exec_sed_doc">(in module biosimulators_pyneuroml.core)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.core.exec_sed_doc">[1]</a>
</li>
</ul></li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.exec_sed_task">exec_sed_task() (in module biosimulators_pyneuroml)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.exec_sed_task">[1]</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.brian2.exec_sed_task">(in module biosimulators_pyneuroml.api.brian2)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.netpyne.exec_sed_task">(in module biosimulators_pyneuroml.api.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.neuron.exec_sed_task">(in module biosimulators_pyneuroml.api.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.pyneuroml.exec_sed_task">(in module biosimulators_pyneuroml.api.pyneuroml)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.core.exec_sed_task">(in module biosimulators_pyneuroml.core)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.core.exec_sed_task">[1]</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.exec_sedml_docs_in_combine_archive">exec_sedml_docs_in_combine_archive() (in module biosimulators_pyneuroml)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.exec_sedml_docs_in_combine_archive">[1]</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.brian2.exec_sedml_docs_in_combine_archive">(in module biosimulators_pyneuroml.api.brian2)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.netpyne.exec_sedml_docs_in_combine_archive">(in module biosimulators_pyneuroml.api.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.neuron.exec_sedml_docs_in_combine_archive">(in module biosimulators_pyneuroml.api.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.pyneuroml.exec_sedml_docs_in_combine_archive">(in module biosimulators_pyneuroml.api.pyneuroml)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.core.exec_sedml_docs_in_combine_archive">(in module biosimulators_pyneuroml.core)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.core.exec_sedml_docs_in_combine_archive">[1]</a>
</li>
</ul></li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.exit_on_fail">exit_on_fail (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.get_available_memory">get_available_memory() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.get_available_processors">get_available_processors() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.get_run_lems_options">get_run_lems_options() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.get_simulator_run_lems_method">get_simulator_run_lems_method() (in module biosimulators_pyneuroml.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.brian2.get_simulator_version">get_simulator_version() (in module biosimulators_pyneuroml.api.brian2)</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.netpyne.get_simulator_version">(in module biosimulators_pyneuroml.api.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.neuron.get_simulator_version">(in module biosimulators_pyneuroml.api.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.pyneuroml.get_simulator_version">(in module biosimulators_pyneuroml.api.pyneuroml)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.load_saved_data">load_saved_data (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#biosimulators_pyneuroml.cli.brian2.main">main() (in module biosimulators_pyneuroml.cli.brian2)</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.cli.html#biosimulators_pyneuroml.cli.netpyne.main">(in module biosimulators_pyneuroml.cli.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#biosimulators_pyneuroml.cli.neuron.main">(in module biosimulators_pyneuroml.cli.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#biosimulators_pyneuroml.cli.pyneuroml.main">(in module biosimulators_pyneuroml.cli.pyneuroml)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.max_memory">max_memory (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li>
module
<ul>
<li><a href="source/biosimulators_opencor.html#module-biosimulators_pyneuroml">biosimulators_pyneuroml</a>, <a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml">[1]</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api">biosimulators_pyneuroml.api</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.brian2">biosimulators_pyneuroml.api.brian2</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.netpyne">biosimulators_pyneuroml.api.netpyne</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.neuron">biosimulators_pyneuroml.api.neuron</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#module-biosimulators_pyneuroml.api.pyneuroml">biosimulators_pyneuroml.api.pyneuroml</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli">biosimulators_pyneuroml.cli</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.brian2">biosimulators_pyneuroml.cli.brian2</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.netpyne">biosimulators_pyneuroml.cli.netpyne</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.neuron">biosimulators_pyneuroml.cli.neuron</a>
</li>
<li><a href="source/biosimulators_pyneuroml.cli.html#module-biosimulators_pyneuroml.cli.pyneuroml">biosimulators_pyneuroml.cli.pyneuroml</a>
</li>
<li><a href="source/biosimulators_opencor.html#module-biosimulators_pyneuroml.core">biosimulators_pyneuroml.core</a>, <a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.core">[1]</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.data_model">biosimulators_pyneuroml.data_model</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#module-biosimulators_pyneuroml.utils">biosimulators_pyneuroml.utils</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="N">N</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.Simulator.netpyne">netpyne (biosimulators_pyneuroml.data_model.Simulator attribute)</a>
<ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.Simulator.netpyne">(biosimulators_pyneuroml.Simulator attribute)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.Simulator.netpyne">[1]</a>
</li>
</ul></li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.Simulator.neuron">neuron (biosimulators_pyneuroml.data_model.Simulator attribute)</a>
<ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.Simulator.neuron">(biosimulators_pyneuroml.Simulator attribute)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.Simulator.neuron">[1]</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.no_gui">no_gui (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.num_processors">num_processors (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="O">O</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.only_generate_scripts">only_generate_scripts (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.paths_to_include">paths_to_include (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.plot">plot (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.preprocess_sed_task">preprocess_sed_task() (in module biosimulators_pyneuroml)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.preprocess_sed_task">[1]</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.brian2.preprocess_sed_task">(in module biosimulators_pyneuroml.api.brian2)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.netpyne.preprocess_sed_task">(in module biosimulators_pyneuroml.api.netpyne)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.neuron.preprocess_sed_task">(in module biosimulators_pyneuroml.api.neuron)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.api.html#biosimulators_pyneuroml.api.pyneuroml.preprocess_sed_task">(in module biosimulators_pyneuroml.api.pyneuroml)</a>
</li>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.core.preprocess_sed_task">(in module biosimulators_pyneuroml.core)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.core.preprocess_sed_task">[1]</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.Simulator.pyneuroml">pyneuroml (biosimulators_pyneuroml.data_model.Simulator attribute)</a>
<ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.Simulator.pyneuroml">(biosimulators_pyneuroml.Simulator attribute)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.Simulator.pyneuroml">[1]</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.read_lems_output_files_configuration">read_lems_output_files_configuration() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.read_xml_file">read_xml_file() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.realtime_output">realtime_output (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.reload_events">reload_events (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.run_lems_xml">run_lems_xml() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions">RunLemsOptions (class in biosimulators_pyneuroml.data_model)</a>
</li>
</ul></td>
</tr></table>
<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.set_sim_in_lems_xml">set_sim_in_lems_xml() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.show_plot_already">show_plot_already (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_opencor.html#biosimulators_pyneuroml.Simulator">Simulator (class in biosimulators_pyneuroml)</a>, <a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.Simulator">[1]</a>
<ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.Simulator">(class in biosimulators_pyneuroml.data_model)</a>
</li>
</ul></li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.skip_run">skip_run (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="T">T</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.to_kw_args">to_kw_args() (biosimulators_pyneuroml.data_model.RunLemsOptions method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="V">V</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.validate_lems_document">validate_lems_document() (in module biosimulators_pyneuroml.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.validate_task">validate_task() (in module biosimulators_pyneuroml.utils)</a>
</li>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.data_model.RunLemsOptions.verbose">verbose (biosimulators_pyneuroml.data_model.RunLemsOptions attribute)</a>
</li>
</ul></td>
</tr></table>
<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.write_lems_output_files_configuration">write_lems_output_files_configuration() (in module biosimulators_pyneuroml.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="source/biosimulators_pyneuroml.html#biosimulators_pyneuroml.utils.write_xml_file">write_xml_file() (in module biosimulators_pyneuroml.utils)</a>
</li>
</ul></td>
</tr></table>
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