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interactivity.ipynb

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@@ -35,26 +35,26 @@
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": 2,
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"id": "6193b269-fbac-46de-9404-e9fc4097c068",
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"metadata": {
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"tags": []
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},
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"outputs": [],
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"source": [
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"# reconstructed movie of CaImAn Sue demo movie after running motion correction and CNMF algorithms\n",
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"movie = np.load('/home/clewis7/Desktop/scipy_demos/rcm.npy')\n",
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"movie = np.load('/home/clewis7/repos/fastplotlib-scipy2023/data/rcm.npy')\n",
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"\n",
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"# temporal traces of identified neurons\n",
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"temporal = np.load('/home/clewis7/Desktop/scipy_demos/temporal.npy')\n",
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"temporal = np.load('/home/clewis7/repos/fastplotlib-scipy2023/data/temporal.npy')\n",
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"\n",
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"# contours of identified neurons\n",
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"contours = np.load('/home/clewis7/Desktop/scipy_demos/contours.npy', allow_pickle=True)"
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"contours = np.load('/home/clewis7/repos/fastplotlib-scipy2023/data/contours.npy', allow_pickle=True)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": 3,
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"id": "6017327f-b197-4d1a-a6d0-36d9712957b1",
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"metadata": {
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"tags": []
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"(3000, 170, 170)"
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]
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},
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"execution_count": 4,
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"execution_count": 3,
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"metadata": {},
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"output_type": "execute_result"
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}
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},
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{
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"cell_type": "code",
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"execution_count": 6,
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"execution_count": 4,
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"id": "f0df4095-d3cb-42b0-8330-a54681ed4b7f",
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"metadata": {
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"tags": []
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"(155, 3000)"
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]
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},
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"execution_count": 6,
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"execution_count": 4,
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"metadata": {},
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"output_type": "execute_result"
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}
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},
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{
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"cell_type": "code",
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"execution_count": 7,
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"execution_count": 5,
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"id": "0d236133-7a66-42a3-b493-c999368e9fac",
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"metadata": {
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"tags": []
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"(155,)"
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]
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},
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"execution_count": 7,
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"execution_count": 5,
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"metadata": {},
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"output_type": "execute_result"
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}

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