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clewis7clewis7
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final nb check
1 parent 0ece678 commit 57e3f01

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-187
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-187
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‎image.ipynb

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@@ -45,7 +45,10 @@
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"\n",
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"Using Jupyter remote frame buffer: https://github.com/vispy/jupyter_rfb\n",
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"\n",
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"Rendering all being done on remote GPU. We are only displaying a rasterized image in the Jupyter canvas."
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"Rendering all being done on remote GPU. We are only displaying a rasterized image in the Jupyter canvas.\n",
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"\n",
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"### GPU: Nvidia RTX 3090\n",
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"### CPU: AMD Ryzen 16 core (5950X)\n"
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]
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},
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{
@@ -68,7 +71,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 10,
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"execution_count": 1,
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"id": "9aeb2e39-cc13-4662-ada0-cfed7ee2b26c",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 11,
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"execution_count": 2,
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"id": "fb57c3d3-f20d-4d88-9e7a-04b9309bc637",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 12,
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"execution_count": 3,
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"id": "99f0c624-85a6-4a42-92b0-30b0b04075b4",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 13,
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"execution_count": 4,
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"id": "630e4762-de01-47fe-be9d-547182a1fbf9",
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"metadata": {
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"tags": []
@@ -146,7 +149,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 14,
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"execution_count": 5,
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"id": "237823b7-e2c0-4e2f-9ee8-e3fc2b4453c4",
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"metadata": {
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"tags": []
@@ -155,7 +158,7 @@
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "b82eaf5ed8ef4e72a5168a6a5afc8e8a",
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"model_id": "a467572f837444d2bd1ebac5fbdaec9b",
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"version_major": 2,
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"version_minor": 0
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},
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},
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{
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"cell_type": "code",
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"execution_count": 38,
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"execution_count": 6,
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"id": "de816c88-1c4a-4071-8a5e-c46c93671ef5",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 39,
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"execution_count": 7,
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"id": "83b2db1b-2783-4e89-bcf3-66bb6e09e18a",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 40,
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"execution_count": 8,
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"id": "3e298c1c-7551-4401-ade0-b9af7d2bbe23",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 41,
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"execution_count": 9,
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"id": "ea100318-023c-4963-b859-8c2a8fcce301",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 42,
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"execution_count": 10,
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"id": "a1320f9f-fff5-4b9b-9a49-0695042ab8ab",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 43,
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"execution_count": 11,
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"id": "4c369d3d-7219-4231-80cd-ce82b6a67a20",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 44,
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"execution_count": 12,
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"id": "aadd757f-6379-4f52-a709-46aa57c56216",
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"metadata": {
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"tags": []
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "d284e575b6ef4aa29aee138feb152a34",
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"model_id": "7eb6c0c85c334acd8765084783e4e983",
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"version_major": 2,
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"version_minor": 0
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},
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},
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"metadata": {},
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"output_type": "display_data"
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},
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{
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"/home/clewis7/repos/fastplotlib/fastplotlib/graphics/_features/_base.py:34: UserWarning: converting float64 array to float32\n",
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" warn(f\"converting {array.dtype} array to float32\")\n"
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]
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}
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],
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"source": [
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},
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{
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"cell_type": "code",
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"execution_count": 45,
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"execution_count": 13,
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"id": "99d234c6-220a-4093-a6a0-6036d2e40000",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 46,
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"execution_count": 14,
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"id": "5139ad7c-2d72-402b-9239-27dcf5bd0c89",
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"metadata": {
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"tags": []
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},
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{
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"cell_type": "code",
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"execution_count": 47,
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"execution_count": 15,
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"id": "207632a8-9f7d-4931-bebc-b43a49e63b9e",
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"metadata": {
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"tags": []
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "7055881e2efa4143be1a3cdec4f26bf1",
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"model_id": "7e30cb38619144d59d4e9e98b8ef0e7f",
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"version_major": 2,
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"version_minor": 0
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},
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "1e1d7a4510f94877b53ee9a9dac3b34c",
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"model_id": "53d54426e28d46f7bc92ba32ab587572",
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"version_major": 2,
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"version_minor": 0
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},
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"text/plain": [
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"VBox(children=(VBox(children=(JupyterWgpuCanvas(), HBox(children=(Button(icon='expand-arrows-alt', layout=Layo…"
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]
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},
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"execution_count": 47,
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"execution_count": 15,
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"metadata": {},
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"output_type": "execute_result"
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}
@@ -564,18 +575,26 @@
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"This is `[t, z, x, y]`"
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]
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},
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{
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"cell_type": "markdown",
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"id": "a1992f2b-abb5-42c8-990b-78d3a1698811",
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"metadata": {},
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"source": [
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"## View each plane in a separate subplot"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 19,
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"id": "7a76119e-2035-48ba-9a88-a8a6f64a3365",
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"execution_count": 38,
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"id": "770f8242-e8ff-40fc-86c3-9d44abca85d6",
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"metadata": {
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"tags": []
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},
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"outputs": [
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "1e0a947e28224892a5653a3ed560d67b",
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"model_id": "8a1b7240246b4128b4c39d49aeb5d17e",
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"version_major": 2,
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"version_minor": 0
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},
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}
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],
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"source": [
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"# get a list of txy arrays for each plane\n",
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"planes = [movie[:, i] for i in range(movie.shape[1])]\n",
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"\n",
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"iw = fpl.ImageWidget(\n",
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" data=movie,\n",
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" vmin_vmax_sliders=True,\n",
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" dims_order=\"tzxy\",\n",
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" slider_dims=[\"t\", \"z\"],\n",
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" grid_plot_kwargs={\"size\": (600, 500)},\n",
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" data=planes,\n",
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" vmin_vmax_sliders=False,\n",
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" grid_plot_kwargs={\"size\": (600, 500), \"controllers\": \"sync\"},\n",
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" cmap=\"gnuplot2\"\n",
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")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 20,
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"id": "6cac96f4-a8e9-481a-8014-2d2570c04db3",
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"metadata": {
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"tags": []
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},
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"outputs": [],
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"source": [
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"sc = Sidecar(title=\"zebra fish\")\n",
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")\n",
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"\n",
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"\n",
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"sc = Sidecar(title=\"zfish planes\")\n",
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"\n",
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"with sc:\n",
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" display(iw.show())"
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},
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{
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"cell_type": "code",
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"execution_count": 21,
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"id": "d29c857c-78f8-4bc5-a00f-83d9985eaeb7",
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"metadata": {
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},
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{
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"cell_type": "code",
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"execution_count": 37,
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"id": "86261ca9-1cd8-43ee-ad72-7a05b3489510",
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"metadata": {
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"tags": []
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},
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"outputs": [],
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"source": [
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"iw.gridplot.close()\n",
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"sc.close()"
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]
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},
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{
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"cell_type": "markdown",
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"id": "a1992f2b-abb5-42c8-990b-78d3a1698811",
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"metadata": {},
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"source": [
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"## View each plane in a separate subplot"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 38,
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"id": "770f8242-e8ff-40fc-86c3-9d44abca85d6",
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"metadata": {
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"tags": []
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},
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"outputs": [
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "8a1b7240246b4128b4c39d49aeb5d17e",
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"version_major": 2,
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"version_minor": 0
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},
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"text/plain": [
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"RFBOutputContext()"
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]
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},
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"metadata": {},
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"output_type": "display_data"
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}
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],
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"source": [
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"# get a list of txy arrays for each plane\n",
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"planes = [movie[:, i] for i in range(movie.shape[1])]\n",
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"\n",
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"iw = fpl.ImageWidget(\n",
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" data=planes,\n",
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" vmin_vmax_sliders=False,\n",
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" grid_plot_kwargs={\"size\": (600, 500), \"controllers\": \"sync\"},\n",
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" cmap=\"gnuplot2\"\n",
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")\n",
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"\n",
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"\n",
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"sc = Sidecar(title=\"zfish planes\")\n",
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"\n",
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"with sc:\n",
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" display(iw.show())"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 39,
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"execution_count": 22,
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"id": "e49e7b96-c1a7-4c1f-956a-1bab482b0ce0",
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"metadata": {
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"tags": []

‎interactivity.ipynb

+2-2
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "a1cecb0a8f4b408783ae703c37624f2e",
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"model_id": "c392ec33c3e5471786a54249d9a343ae",
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"version_major": 2,
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{
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "0136aea73e49401b92d017b06ad14fa9",
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"model_id": "e0031da71f6641b0a4dab8565c7a2050",
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"version_major": 2,
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"version_minor": 0
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},

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