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Remove bjorn local machine paths from files

Status: Open.

#384 In pydna-group/pydna;

· manulera opened on Jul 4, 2025

Move away from default pydna Assembly behaviour (use_fragment_order, use_all_fragments)

new-assembly-model

Status: Open.

#372 In pydna-group/pydna;

· manulera opened on Jun 19, 2025

assembly2 > fill_left and fill_right see if they can be moved to Dseq module as class methods

new-assembly-model

Status: Open.

#371 In pydna-group/pydna;

· manulera opened on Jun 19, 2025

dseqrecord.reverse_complement() edits parent sequence in place

bug

Status: Open.

#368 In pydna-group/pydna;

· manulera opened on Jun 18, 2025

Algorithm in assembly should handle origin-spanning sequences

bug

fixed-with-new-assembly-model

Status: Open.

#367 In pydna-group/pydna;

· manulera opened on Jun 18, 2025

Stripped down Pydna

enhancement

Status: Open.

#365 In pydna-group/pydna;

· BjornFJohansson opened on Jun 18, 2025

sticky_end_sub_strings - move from using limit to more meaningful name

new-assembly-model

Status: Open.

#364 In pydna-group/pydna;

· manulera opened on Jun 13, 2025

new assembly model: gather_overlapping_locations - check behaviour for blunt ligation

new-assembly-model

Status: Open.

#363 In pydna-group/pydna;

· manulera opened on Jun 13, 2025

Remove some of __init__ functionality

Status: Open.

#362 In pydna-group/pydna;

· manulera opened on Jun 12, 2025

Remove or make optional the <code>pydna.ini</code> functionality

Status: Open.

#361 In pydna-group/pydna;

· manulera opened on Jun 12, 2025

Fix black / flake8 on all files

Status: Open.

#346 In pydna-group/pydna;

· manulera opened on Mar 10, 2025

👋 Say hi! Join the community! Let us know what you are using pydna for

Status: Open.

#342 In pydna-group/pydna;

· manulera opened on Jan 27, 2025