Java: convert remaining java-code-scanning.qls query tests to .qlref
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Also, split off into separate directory from JndiInjectionTest because their $Alerts were interfering with each other.
Leaves ReDoS.ql unmodified since it's not a dataflow query; just moves it to its own directory.
It's a non-path query, so the InlineExpectationsTest postprocessor doesn't do anything.
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