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458 Open 3,077 Closed
458 Open 3,077 Closed
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Issues list

java.util.ConcurrentModificationException when using array jobs in Slurm
#6108 opened May 21, 2025 by xsvato01
Google Batch: file().listFiles() fails when trying to read an updating directory
#6106 opened May 20, 2025 by VasLem
Officially support main.nf to abstract substructure in folders below
#6104 opened May 20, 2025 by henrjk
nf-test.config should be excluded from linting
#6101 opened May 19, 2025 by adamrtalbot
1
task.id is never available in process shell: or exec: block
#6099 opened May 18, 2025 by racosgrove
Closure defined by anonymous assignment has contradictory linting outcome
#6095 opened May 16, 2025 by ScottNortonPhD
2
nextflow.util not imported in included config files bug
#6094 opened May 16, 2025 by ScottNortonPhD
1
Support for Pixi
#6092 opened May 16, 2025 by adamrtalbot
Docs on defaults for nextflow config options
#6088 opened May 15, 2025 by nick-youngblut
Add decompress: true option to Path.size() method
#6086 opened May 15, 2025 by prototaxites
GCP Batch jobs => mv: failed to close
#6080 opened May 14, 2025 by nick-youngblut
2
Cleanup after failed step
#6077 opened May 14, 2025 by bartcharbon
Secrets cannot contain \n
#6073 opened May 13, 2025 by long-matt-r
Staging /dev causes apptainer/singularity processes to fail.
#6072 opened May 13, 2025 by alanhoyle
2
nextflow secrets set does not work with values starting with --
#6071 opened May 13, 2025 by long-matt-r
‘Cannot find target plugin’ error after Nextflow update
#6068 opened May 13, 2025 by jsitarova-dnanexus
docs on what can be used for path(stageName) docs
#6051 opened May 7, 2025 by nick-youngblut
@christopher-hakkaart
6
docs on using closure for path param in publishDir lang/config
#6048 opened May 7, 2025 by nick-youngblut
1
Make Google Batch mount path configurable
#6046 opened May 7, 2025 by adamrtalbot
1
1
Lineage: Accept run names planned
#6043 opened May 7, 2025 by ewels
1
Not loggin nextflow.config.ConfigBuilder trace when required
#6039 opened May 6, 2025 by kdesnos
Using AWS Batch with a pre-defined Job Definition executor/aws-batch
#6031 opened May 3, 2025 by decibel-tom
2
Make script loader v2 compatible with console
#6028 opened May 2, 2025 by bentsherman 25.10
@bentsherman
Combining with empty list should produce a list lang/operators
#6026 opened May 2, 2025 by VasLem
2
Add support for uploading results to AWS S3 with SHA256 ETags using publishDir storage/aws
#6025 opened May 1, 2025 by robnewman
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