stuart-lab / signac
R toolkit for the analysis of single-cell chromatin data
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R toolkit for the analysis of single-cell chromatin data
R toolkit for single cell genomics
R for data science: a book
Inferring CNV from Single-Cell RNA-Seq
An implementation of the Grammar of Graphics in R
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
🎓 A collection of interactive courses for the swirl R package.
R package for detecting doublets in single-cell RNA sequencing data
Tree-sitter grammar for R
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Fast, sensitive and accurate integration of single-cell data with Harmony
📊 A universal enrichment tool for interpreting omics data
Accurate sample inference from amplicon data with single nucleotide resolution
Easy interactive web applications with R
Call LLM APIs from R
Make Complex Heatmaps
Dynamic Documents for R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
renv: Project environments for R.
R to Fortran Transpiler