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peakVI: effect_size calculation discrepancy: est_prob2 - est_prob1 vs doc's est_prob1 - est_prob2

bug

Status: Open.

#3391 In scverse/scvi-tools;

· Xiao123368 opened on Jun 23, 2025

peakVI: two_sided argument not recognized in differential_accessibility() despite tutorial usage

bug

Status: Open.

#3390 In scverse/scvi-tools;

· Xiao123368 opened on Jun 23, 2025

Interpretability of SCANVI model predictions

bug

Status: Open.

#3383 In scverse/scvi-tools;

· Tijs-dot opened on Jun 10, 2025

<code>MULTIVI.get_protein_foreground_probability</code> raises AttributeError

bug

Status: Open.

#3364 In scverse/scvi-tools;

· ilia-kats opened on May 30, 2025

MrVI - minimal number of genes

bug

Status: Open.

#3347 In scverse/scvi-tools;

· dansteiert opened on May 22, 2025

make scarches work with proteins, not only genes, in totalvi/anvi

enhancement

Status: Open.

#3320 In scverse/scvi-tools;

· ori-kron-wis opened on May 13, 2025

Can't save model after multi-GPU training.

bug

Status: Open.

#3299 In scverse/scvi-tools;

· alexanderchang1 opened on Apr 28, 2025

Error when trying to feature native MLX accelerated scvi

enhancement

Status: Open.

#3268 In scverse/scvi-tools;

· c0nleyinnnn opened on Mar 23, 2025

MrVI slowdown due to JAX compilation update

bug

Status: Open.

#3179 In scverse/scvi-tools;

· justjhong opened on Feb 10, 2025

Support metric and loss loging on step

enhancement

Status: Open.

#3020 In scverse/scvi-tools;

· Hrovatin opened on Oct 19, 2024

Use explicit configs instead of kwargs

enhancement

Status: Open.

#2904 In scverse/scvi-tools;

· martinkim0 opened on Jul 18, 2024

 ·  

scvi-tools 2.0

Jax version of VAEMixin

backlog

enhancement

good first issue

jax

Status: Open.

#2779 In scverse/scvi-tools;

· justjhong opened on May 6, 2024