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@DeepLabCut

DeepLabCut

DeepLabCut, a software package for animal pose estimation. Created by the A. and M.W. Mathis Labs

Welcome to the DeepLabCut Organization! 👋

🙋‍♀️ DeepLabCut™ is an efficient method for 2D and 3D markerless pose estimation based on transfer learning with deep neural networks.

We also have several related code repositories that may be of interest:

  • DLC-Live! & DLC-Live! GUI -- export your trained DeepLabCut model and run it for live analysis. Consider using our easy GUI to do so.
  • DLCUtils -- this repo hosts some code and key links to helper packages that input the outputs of DeepLabCut for downstream analysis.
  • DLC Workshop & Educational Materials -- learn about how to use and develop with DeepLabCut!
  • DLC2Kinematics -- use this code to load DeepLabCut (H5) files for movement analysis, dev. by MW Mathis Lab.
  • DLC2Action -- for action segmentation based on pose estimation data, dev. by A Mathis Group.
  • CEBRA -- use this code to load DeepLabCut (H5) files for advnced nonlinear embedding analysis and joint modeling, dev. by MW Mathis Lab.

🌈 Contribution guidelines to this project can be found here!

🍿 Find more resources, our papers, and examples on the main website!

🧙 Check out the repos below to find helper code, additional tools, and more!

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  1. DeepLabCut Public

    Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

    Python 5.1k 1.7k

  2. DeepLabCut-live Public

    SDK for running DeepLabCut on a live video stream

    Python 210 51

  3. DeepLabCut-Workshop-Materials Public

    Workshop material for using DeepLabCut

    Jupyter Notebook 144 36

  4. DLCutils Public

    Various scripts to support deeplabcut and what to do afterwards!

    Jupyter Notebook 155 69

  5. DeepLabCut-live-GUI Public

    GUI to run DeepLabCut on live video feed

    Python 61 21

  6. Primer-MotionCapture Public

    A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives

    Jupyter Notebook 22 6

Repositories

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