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@open2c

Open Chromosome Collective

README.md

Welcome to Open2C!

Open2C is a community that develops and maintains open-source tools for 3D chromosome biology and genomic data science, primarily in Python.

Here's how to get started:

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  1. cooler cooler Public

    A cool place to store your Hi-C

    Python 220 56

  2. cooltools cooltools Public

    The tools for your .cool's

    Jupyter Notebook 154 52

  3. pairtools pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 113 34

  4. bioframe bioframe Public

    Genomic interval operations on Pandas DataFrames

    Python 183 35

  5. distiller-nf distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 97 26

  6. polychrom polychrom Public

    Chromosome polymer simulations and in silico capture experiments

    Python 51 16

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