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JacobKMcPherson/README.md

Welcome! Please check out my...

Scholarly Works and Socials

PubMed Scholar Scopus ORCID ResearchGate

Favorite Tools and Languages

GitHub Git AWS Ubuntu Docker

R Python Julia LaTeX Zotero

Overleaf RStudio Jupyter VSCode

shiny quarto rmarkdown tidyverse

SciPy NumPy Pandas Plotly

Keras PyTorch TensorFlow Markdown Netlify

Favorite Resources for...

CONTENT RESOURCES
Data RedCap EMBL-EBI NCBI BioProject SRA Genome PubChem
Data Coalitions Global BioData OpenData Elixir OmicsDI DDBJ EMBL-EBI NCBI SIB
High-Performance Computing NeuroSnap AI NIH HPC NSF Access TACC
Artificial Intelligence Goodfellow 2016 Deep Learning
Small Molecules Drugs Isomorphic Labs ChEBI ChEMBL BindingDB DrugBank SwissDrug OrphData IUPHAR PharmGKB ChemAxon
Life Science Vendors Thermo Eppendorf Qiagen Schrodinger Emerald Cloud Labs
Infectious Diseases BacDive BEI CDC AR Isolate Bank BV-BRC MGnify CARD Silva EcoCyc SubtiWiki FungiDB LPSNViralZone ViralHostRangeDB VirusHostDB(JP) Viruses(NCBI) HIVDB
Proteins and Enzymes AlphaFold UniProt UniProt3D EMPIAR EMDB EMDataResource CryoSPARC Cryo-ET WW-PDB RCSB-PDB InterPro UCSF ChimeraX OpenStructure CATH SBGrid OPIG OpenTargets TCBG
Interactions & Reactions Reactome RHEA STRING BRENDA IMEx
Expression BioImage Expression (JAX) GTEx GXA GEO ProteomeXchange Human Protein Atlas RTI archs4
Genomes & Models YeastGenome WormBase FlyBase ZFin GenCodes RatGenomeData Ensembl ClinGen
Other GO KEGG MDDDB BioModels LipidMaps
Health USPSTF HealthCheckTools MyHealthFinder
Clinical Research ResearchMatch HHS.Gov Open-Data AllOfUs UK BioBank BioBank Japan
Academia AI Patient OpenEvidence OpenRead Copyright.com

To Edit the GitBook open this repo in an RStudio Posit Cloud directory, edit the .RMD files, compile & render the book using the native environment button, and Git push back to repo

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