The Caccone Lab at Yale
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snakemake-pipelines
snakemake-pipelines Publicsnakemake-implemented version of Andrea's analysis pipeline
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tsetseDB
tsetseDB PublicCode associated with the creation and maintenance of the sample database for our tsetse fly population genomics project
Python
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TsetseCheckout
TsetseCheckout PublicA system for users to request sample tubes from the Aksoy/Caccone Labs' tsetse fly specimen database.
JavaScript
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glossina_genome_stuff
glossina_genome_stuff PublicLittle things generated from necessity like chromosome name re-mappings and such that would be good to keep track of in a form that facilitates access from python etc on diff machines/hpc environments
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gloria_soria_ddRAD_2015
gloria_soria_ddRAD_2015 Publiccode in support of the tsetse ddRAD paper
Python
Repositories
- gmm-to-gff-transcripts-vs-snps Public
Pipeline used to incorporate RNA-seq based transcriptomics information from Glossina morsitans morsitans into the Glossina fuscipes fuscipes annotation information used to characterize SNPs predicted to be significant in G. f. f.
- format-collection-sheets Public
Performs basic recoding of collection sheets to yield a standardized spreadsheet format.
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- gus_analysis_code Public
Code needed to reproduce main work done by Gus Dunn for the Caccone Lab at Yale.
- cookiecutter-pylibrary Public Forked from ionelmc/cookiecutter-pylibrary
Enhanced cookiecutter template for Python libraries.
- TsetseCheckout Public
A system for users to request sample tubes from the Aksoy/Caccone Labs' tsetse fly specimen database.
- glossina_genome_stuff Public
Little things generated from necessity like chromosome name re-mappings and such that would be good to keep track of in a form that facilitates access from python etc on diff machines/hpc environments
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