💾 📃 "Reads to report" for public health and clinical microbiology
A resistome profiler for Graphing Resistance Out Of meTagenomes
JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
A pipeline for Detecting Resistome Associated taXa
Bacterial analysis toolbox for full ESKAPEE pathogen characterisation and profiling the resistome, mobilome, virulome & phylogenomics using WGS
Mapping, snps calling, phylogeny
Predicts bacterial resistome
This Docker image provides a ready-to-use environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data & profiling Resistome, Mobilome & Virulome. It includes all required tools & dependencies, enabling reproducible, scalable analysis of NGS data in research & public health settings, particularly for low-resource environment
A number of pipelines that are managed by Gnu Make for conducting various analyses on high-throughput NGS
Repo for scripts/codes applied in my studies
A Computational Pipeline for Ranking Resistome Risk of Metagenomic Samples
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