From 4070bcaca2fabec7d300ceb9f639575b9f6546f8 Mon Sep 17 00:00:00 2001
From: Aaron Rudkin <junk_signups@rudkin.ca>
Date: Thu, 30 Nov 2017 11:31:55 -0800
Subject: [PATCH] Documentation update Nov 30 2017

---
 _pkgdown.yml                                  | 18 +++++
 docs/LICENSE.html                             |  9 +--
 docs/articles/index.html                      |  9 +--
 docs/articles/randomizr_vignette.html         | 10 +--
 docs/articles/srandomizr_vignette.html        |  9 +--
 docs/authors.html                             | 13 ++--
 docs/index.html                               | 66 ++++++++++++-------
 docs/pkgdown.css                              | 17 +++++
 docs/pkgdown.js                               |  3 +
 docs/reference/block_and_cluster_ra.html      |  9 +--
 .../block_and_cluster_ra_probabilities.html   |  9 +--
 docs/reference/block_ra.html                  |  9 +--
 docs/reference/block_ra_probabilities.html    |  9 +--
 docs/reference/cluster_ra.html                |  9 +--
 docs/reference/cluster_ra_probabilities.html  |  9 +--
 docs/reference/cluster_rs.html                |  9 +--
 docs/reference/cluster_rs_probabilities.html  |  9 +--
 docs/reference/complete_ra.html               |  9 +--
 docs/reference/complete_ra_probabilities.html |  9 +--
 docs/reference/complete_rs.html               |  9 +--
 docs/reference/complete_rs_probabilities.html |  9 +--
 docs/reference/conduct_ra.html                |  9 +--
 docs/reference/declare_ra.html                | 13 ++--
 docs/reference/declare_rs.html                |  9 +--
 docs/reference/draw_rs.html                   |  9 +--
 docs/reference/index.html                     |  9 +--
 .../obtain_condition_probabilities.html       |  9 +--
 .../obtain_inclusion_probabilities.html       |  9 +--
 docs/reference/obtain_num_permutations.html   |  9 +--
 docs/reference/obtain_permutation_matrix.html |  9 +--
 .../obtain_permutation_probabilities.html     |  9 +--
 docs/reference/randomizr.html                 |  9 +--
 docs/reference/simple_ra.html                 |  9 +--
 docs/reference/simple_ra_probabilities.html   |  9 +--
 docs/reference/simple_rs.html                 |  9 +--
 docs/reference/simple_rs_probabilities.html   |  9 +--
 docs/reference/strata_and_cluster_rs.html     |  9 +--
 .../strata_and_cluster_rs_probabilities.html  |  9 +--
 docs/reference/strata_rs.html                 |  9 +--
 docs/reference/strata_rs_probabilities.html   |  9 +--
 docs/templates/navbar.html                    |  2 +-
 index.Rmd                                     | 35 +++++++++-
 man/.Rapp.history                             |  0
 vignettes/randomizr_vignette.Rmd              |  2 +-
 44 files changed, 231 insertions(+), 245 deletions(-)
 delete mode 100644 man/.Rapp.history

diff --git a/_pkgdown.yml b/_pkgdown.yml
index 29b0e03..333882e 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -1,5 +1,21 @@
 template:
   path: "docs/templates"
+  
+home:
+  sections:
+    - links
+    - citation
+    - authors
+  link_order:
+    - repo
+    - github
+    - bug_report  
+
+roles_include:
+  - aut
+  - cre
+  - fnd
+  - ctb
 
 navbar:
   type: default
@@ -25,3 +41,5 @@ navbar:
 
   - text: "DeclareDesign home"
     href: http://declaredesign.org
+  right:
+  - text: 
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
index bd030a4..15c0939 100644
--- a/docs/LICENSE.html
+++ b/docs/LICENSE.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html">randomizr</a>
+      <a class="navbar-brand" href="">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -121,7 +118,7 @@ <h1>License</h1>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 318a54e..ada92ef 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -124,7 +121,7 @@ <h3>All vignettes</h3>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/articles/randomizr_vignette.html b/docs/articles/randomizr_vignette.html
index ee6e394..cfeb6c6 100644
--- a/docs/articles/randomizr_vignette.html
+++ b/docs/articles/randomizr_vignette.html
@@ -24,7 +24,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -67,10 +67,7 @@
       </ul>
 <ul class="nav navbar-nav navbar-right">
 <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
 </div>
@@ -970,7 +967,6 @@ <h2 class="hasAnchor">
 <p>The power of clustered experiments can sometimes be improved through blocking. In this scenario, whole clusters are members of a particular block – imagine villages nested within discrete regions, or classrooms nested within discrete schools.</p>
 <p>As an example, let’s group our clusters into blocks by size using <code>dplyr</code></p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">suppressMessages</span>(<span class="kw">library</span>(dplyr))
-<span class="co">#&gt; Warning: package 'dplyr' was built under R version 3.4.2</span>
 cluster_level_df &lt;-<span class="st"> </span>
 <span class="st">  </span>hec <span class="op">%&gt;%</span>
 <span class="st">  </span><span class="kw"><a href="http://dplyr.tidyverse.org/reference/group_by.html">group_by</a></span>(clust_var) <span class="op">%&gt;%</span>
@@ -1323,7 +1319,7 @@ <h2 class="hasAnchor">
 
 
       <footer><div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/articles/srandomizr_vignette.html b/docs/articles/srandomizr_vignette.html
index 7c585f0..4466a4e 100644
--- a/docs/articles/srandomizr_vignette.html
+++ b/docs/articles/srandomizr_vignette.html
@@ -24,7 +24,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -67,10 +67,7 @@
       </ul>
 <ul class="nav navbar-nav navbar-right">
 <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
 </div>
@@ -750,7 +747,7 @@ <h2 class="hasAnchor">
 
 
       <footer><div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/authors.html b/docs/authors.html
index 2f85d85..5aae8eb 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html">randomizr</a>
+      <a class="navbar-brand" href="">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -119,6 +116,10 @@ <h1>Authors</h1>
         <p><strong>Jasper Cooper</strong>. Contributor.
         </p>
       </li>
+      <li>
+        <p><strong>Neal Fultz</strong>. Contributor.
+        <br /><small>C version of restricted partitions</small></p>
+      </li>
     </ul>
 
   </div>
@@ -128,7 +129,7 @@ <h1>Authors</h1>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/index.html b/docs/index.html
index 865a21a..2eb7288 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -24,7 +24,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html">randomizr</a>
+      <a class="navbar-brand" href="">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -67,10 +67,7 @@
       </ul>
 <ul class="nav navbar-nav navbar-right">
 <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
 </div>
@@ -91,19 +88,22 @@
 <div id="randomizr-easy-to-use-tools-for-common-forms-of-random-assignment-and-sampling" class="section level1">
 <div class="page-header"><h1 class="hasAnchor">
 <a href="#randomizr-easy-to-use-tools-for-common-forms-of-random-assignment-and-sampling" class="anchor"></a>randomizr: Easy to use tools for common forms of random assignment and sampling</h1></div>
-<p><strong>randomizr</strong> is designed to make conducting field, lab, survey, or online experiments easier by automating the random assignment process. Social and lab scientists conducting experiments need a process to assign individuals or units of observation to treatment or control wings. Common designs include simple random assignment, complete randomization, block randomization, cluster randomization, and blocked cluster randomization. <strong>randomizr</strong> automates all of these processes and assists scientists in doing transparent, replicable science.</p>
-<div id="installing-randomizr" class="section level3">
+<p><strong>randomizr</strong> is designed to make conducting field, lab, survey, or online experiments easier by automating the random assignment process. Social and lab scientists conducting experiments need a process to assign individuals or units of observation to treatment or control wings. Common designs include simple random assignment, complete randomization, block randomization, cluster randomization, and blocked cluster randomization. <strong>randomizr</strong> automates all of these processes and assists scientists in doing transparent, replicable science. We offer <strong>randomizr</strong> for both <code>R</code> and <code>Stata</code>.</p>
+<div id="randomizr-for-r" class="section level2">
+<h2 class="hasAnchor">
+<a href="#randomizr-for-r" class="anchor"></a>randomizr for R</h2>
+<div id="installing-randomizr-for-r" class="section level3">
 <h3 class="hasAnchor">
-<a href="#installing-randomizr" class="anchor"></a>Installing randomizr</h3>
+<a href="#installing-randomizr-for-r" class="anchor"></a>Installing randomizr for R</h3>
 <p>Installing the latest production-ready version of <strong>randomizr</strong> in <code>R</code> is simple.</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"randomizr"</span>)</code></pre></div>
 <p>If you would like to use the current development release of <strong>randomizr</strong> (please be aware that development releases may include bugs or syntax changes), run the following code:</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"devtools"</span>)
 devtools<span class="op">::</span><span class="kw"><a href="http://www.rdocumentation.org/packages/devtools/topics/install_github">install_github</a></span>(<span class="st">"DeclareDesign/randomizr"</span>)</code></pre></div>
 </div>
-<div id="getting-started" class="section level3">
+<div id="getting-started-with-randomizr-for-r" class="section level3">
 <h3 class="hasAnchor">
-<a href="#getting-started" class="anchor"></a>Getting started</h3>
+<a href="#getting-started-with-randomizr-for-r" class="anchor"></a>Getting started with randomizr for R</h3>
 <p><strong>randomizr</strong> has five main random assignment functions, corresponding to the common experimental designs listed above. You can read more about using each of these functions in our <a href="reference/index.html">reference library</a> or by clicking on the function names: <code><a href="reference/simple_ra.html">simple_ra()</a></code>, <code><a href="reference/complete_ra.html">complete_ra()</a></code>, <code><a href="reference/block_ra.html">block_ra()</a></code>, <code><a href="reference/cluster_ra.html">cluster_ra()</a></code>, and <code><a href="reference/block_and_cluster_ra.html">block_and_cluster_ra()</a></code>.</p>
 <p><code><a href="reference/complete_ra.html">complete_ra()</a></code> (Complete randomization) is the function that will be most appropriate for a large number of experimental situations: when you want to assign a fixed <code>m</code> units out of a population of <code>N</code> units to treatment:</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(randomizr)
@@ -206,6 +206,24 @@ <h3 class="hasAnchor">
 </tbody>
 </table>
 <p>For more information about all of <strong>randomizr</strong>’s functionality, please see our <a href="articles/randomizr_vignette.html">online tutorial</a></p>
+</div>
+</div>
+<div id="randomizr-for-stata" class="section level2">
+<h2 class="hasAnchor">
+<a href="#randomizr-for-stata" class="anchor"></a>randomizr for Stata</h2>
+<p>Installing the latest production-ready version of <strong>randomizr</strong> from ssc is easy:</p>
+<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">ssc install randomizr</code></pre></div>
+<p>If you would like to install the latest development release directly from GitHub, run the following code:</p>
+<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">net install randomizr, <span class="kw">from</span>(https<span class="op">:</span><span class="er">//</span>raw.githubusercontent.com<span class="op">/</span>DeclareDesign<span class="op">/</span>strandomizr<span class="op">/</span>master<span class="op">/</span>) replace</code></pre></div>
+</div>
+<div id="getting-started-with-randomizr-for-stata" class="section level2">
+<h2 class="hasAnchor">
+<a href="#getting-started-with-randomizr-for-stata" class="anchor"></a>Getting started with randomizr for Stata</h2>
+<p><code>complete_ra</code> (complete randomization) is the workhorse function that will be most appropriate for a large number of experimental situations: it assigns m of N units to treatment:</p>
+<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">ssc install randomizr
+set obs <span class="dv">100</span>
+complete_ra, <span class="kw">m</span>(<span class="dv">50</span>)</code></pre></div>
+<p>A Stata version of our <a href="articles/srandomizr_vignette.html">online tutorial</a> is also available.</p>
 <p>Happy randomizing!</p>
 </div>
 </div>
@@ -213,30 +231,32 @@ <h3 class="hasAnchor">
   </div>
 
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2 class="hasAnchor">
-<a href="#sidebar" class="anchor"></a>Links</h2>
+    <div id="sidebar_links">
+<h2 class="hasAnchor">
+<a href="#sidebar_links" class="anchor"></a>Links</h2>
 <ul class="list-unstyled">
-<li>Download from CRAN at <br><a href="https://cran.r-project.org/package=randomizr">https://​cran.r-project.org/​package=randomizr</a>
-</li>
-<li>Browse source code at <br><a href="https://github.com/DeclareDesign/randomizr">https://​github.com/​DeclareDesign/​randomizr</a>
-</li>
-<li>Report a bug at <br><a href="https://github.com/DeclareDesign/randomizr/issues">https://​github.com/​DeclareDesign/​randomizr/​issues</a>
-</li>
+<li><a href="https://cran.r-project.org/package=randomizr">Download from CRAN</a></li>
+<li><a href="https://github.com/DeclareDesign/randomizr">Help develop randomizr</a></li>
+<li><a href="https://github.com/DeclareDesign/randomizr/issues">Report a bug</a></li>
 </ul>
-<h2>License</h2>
-<p><a href="https://opensource.org/licenses/mit-license.php">MIT</a> + file <a href="LICENSE.html">LICENSE</a></p>
-<h2>Developers</h2>
+</div>
+<div id="sidebar_authors">
+<h2 class="hasAnchor">
+<a href="#sidebar_authors" class="anchor"></a>Developers</h2>
 <ul class="list-unstyled">
 <li>Alexander Coppock <br><small class="roles"> Author, maintainer </small> </li>
-<li><a href="authors.html">All authors...</a></li>
+<li>Jasper Cooper <br><small class="roles"> Contributor </small> </li>
+<li>Neal Fultz <br><small class="roles"> Contributor </small> <br><small>(C version of restricted partitions)</small>
+</li>
 </ul>
 </div>
+      </div>
 
 </div>
 
 
       <footer><div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
index 209ce57..4eba1d5 100644
--- a/docs/pkgdown.css
+++ b/docs/pkgdown.css
@@ -1,3 +1,20 @@
+/* Custom overrides */
+.nav-pills > li.active > .nav-stacked > li.active > a {
+  /* Coolors.co generated palette: 4 shades lighter of same hue */
+  background-color: #C7DAEB;
+  /* Good contrast option for background color selected. */
+  color: #1F2D3D;
+}
+
+.nav-pills > li > .nav-stacked > li > a {
+  /* Left margin for nested lists */
+  margin-left: 10px;
+}
+
+.nav-pills > li > a {
+	padding: 7px 10px;
+}
+
 /* Sticker footer */
 body > .container {
   display: flex;
diff --git a/docs/pkgdown.js b/docs/pkgdown.js
index 4b81713..5e7cab1 100644
--- a/docs/pkgdown.js
+++ b/docs/pkgdown.js
@@ -36,6 +36,9 @@ function is_prefix(needle, haystack) {
   if (needle.length > haystack.lengh)
     return(false);
 
+  if (haystack.length == 0)
+    return(false);
+
   for (var i = 0; i < haystack.length; i++) {
     if (needle[i] != haystack[i])
       return(false);
diff --git a/docs/reference/block_and_cluster_ra.html b/docs/reference/block_and_cluster_ra.html
index eef10ae..6351607 100644
--- a/docs/reference/block_and_cluster_ra.html
+++ b/docs/reference/block_and_cluster_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -276,7 +273,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/block_and_cluster_ra_probabilities.html b/docs/reference/block_and_cluster_ra_probabilities.html
index 81acc29..3b3d61d 100644
--- a/docs/reference/block_and_cluster_ra_probabilities.html
+++ b/docs/reference/block_and_cluster_ra_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -251,7 +248,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/block_ra.html b/docs/reference/block_ra.html
index f3197d3..d2ac875 100644
--- a/docs/reference/block_ra.html
+++ b/docs/reference/block_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -277,7 +274,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/block_ra_probabilities.html b/docs/reference/block_ra_probabilities.html
index 842dbd6..da2ba75 100644
--- a/docs/reference/block_ra_probabilities.html
+++ b/docs/reference/block_ra_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -271,7 +268,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/cluster_ra.html b/docs/reference/cluster_ra.html
index e764870..1e64712 100644
--- a/docs/reference/cluster_ra.html
+++ b/docs/reference/cluster_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -259,7 +256,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/cluster_ra_probabilities.html b/docs/reference/cluster_ra_probabilities.html
index 1974227..3017a93 100644
--- a/docs/reference/cluster_ra_probabilities.html
+++ b/docs/reference/cluster_ra_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -251,7 +248,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/cluster_rs.html b/docs/reference/cluster_rs.html
index c74a77f..a5cdc53 100644
--- a/docs/reference/cluster_rs.html
+++ b/docs/reference/cluster_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -185,7 +182,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/cluster_rs_probabilities.html b/docs/reference/cluster_rs_probabilities.html
index 7cc97ea..3c7bd6c 100644
--- a/docs/reference/cluster_rs_probabilities.html
+++ b/docs/reference/cluster_rs_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -190,7 +187,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/complete_ra.html b/docs/reference/complete_ra.html
index a1b0d84..9686251 100644
--- a/docs/reference/complete_ra.html
+++ b/docs/reference/complete_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -228,7 +225,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/complete_ra_probabilities.html b/docs/reference/complete_ra_probabilities.html
index 6627293..1e68e02 100644
--- a/docs/reference/complete_ra_probabilities.html
+++ b/docs/reference/complete_ra_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -254,7 +251,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/complete_rs.html b/docs/reference/complete_rs.html
index 4114b13..f42b90c 100644
--- a/docs/reference/complete_rs.html
+++ b/docs/reference/complete_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -183,7 +180,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/complete_rs_probabilities.html b/docs/reference/complete_rs_probabilities.html
index d935ca1..5e07a58 100644
--- a/docs/reference/complete_rs_probabilities.html
+++ b/docs/reference/complete_rs_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -172,7 +169,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/conduct_ra.html b/docs/reference/conduct_ra.html
index 3dbca27..299430b 100644
--- a/docs/reference/conduct_ra.html
+++ b/docs/reference/conduct_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -217,7 +214,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/declare_ra.html b/docs/reference/declare_ra.html
index 91dd882..6dc8c6f 100644
--- a/docs/reference/declare_ra.html
+++ b/docs/reference/declare_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -179,6 +176,10 @@ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Ar
       <th>simple</th>
       <td><p>logical, defaults to FALSE. If TRUE, simple random assignment is used. When simple = TRUE, please do not specify m, m_each, block_m, or block_m_each.</p></td>
     </tr>
+    <tr>
+      <th>permutation_matrix</th>
+      <td><p>for custom random assignment procedures.</p></td>
+    </tr>
     <tr>
       <th>check_inputs</th>
       <td><p>logical. Defaults to TRUE.</p></td>
@@ -333,7 +334,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/declare_rs.html b/docs/reference/declare_rs.html
index 4be141e..795d713 100644
--- a/docs/reference/declare_rs.html
+++ b/docs/reference/declare_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -274,7 +271,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/draw_rs.html b/docs/reference/draw_rs.html
index bc8b15f..6ff1877 100644
--- a/docs/reference/draw_rs.html
+++ b/docs/reference/draw_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -186,7 +183,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 878e051..815be73 100644
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+++ b/docs/reference/index.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -324,7 +321,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/obtain_condition_probabilities.html b/docs/reference/obtain_condition_probabilities.html
index 9dd2040..0357c78 100644
--- a/docs/reference/obtain_condition_probabilities.html
+++ b/docs/reference/obtain_condition_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -251,7 +248,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/obtain_inclusion_probabilities.html b/docs/reference/obtain_inclusion_probabilities.html
index 3700129..15c139d 100644
--- a/docs/reference/obtain_inclusion_probabilities.html
+++ b/docs/reference/obtain_inclusion_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -201,7 +198,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/obtain_num_permutations.html b/docs/reference/obtain_num_permutations.html
index fc12932..a346496 100644
--- a/docs/reference/obtain_num_permutations.html
+++ b/docs/reference/obtain_num_permutations.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -171,7 +168,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/obtain_permutation_matrix.html b/docs/reference/obtain_permutation_matrix.html
index d5df2f3..9504cfe 100644
--- a/docs/reference/obtain_permutation_matrix.html
+++ b/docs/reference/obtain_permutation_matrix.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -176,7 +173,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/obtain_permutation_probabilities.html b/docs/reference/obtain_permutation_probabilities.html
index 97d95cd..2b645ce 100644
--- a/docs/reference/obtain_permutation_probabilities.html
+++ b/docs/reference/obtain_permutation_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -165,7 +162,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/randomizr.html b/docs/reference/randomizr.html
index 3355eb6..339954f 100644
--- a/docs/reference/randomizr.html
+++ b/docs/reference/randomizr.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -127,7 +124,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/simple_ra.html b/docs/reference/simple_ra.html
index 6de1c5d..d1f493d 100644
--- a/docs/reference/simple_ra.html
+++ b/docs/reference/simple_ra.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -203,7 +200,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/simple_ra_probabilities.html b/docs/reference/simple_ra_probabilities.html
index bf949bb..0b40f9d 100644
--- a/docs/reference/simple_ra_probabilities.html
+++ b/docs/reference/simple_ra_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -229,7 +226,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/simple_rs.html b/docs/reference/simple_rs.html
index 9420cc8..89b2eaa 100644
--- a/docs/reference/simple_rs.html
+++ b/docs/reference/simple_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -165,7 +162,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/simple_rs_probabilities.html b/docs/reference/simple_rs_probabilities.html
index 1bee037..27a4207 100644
--- a/docs/reference/simple_rs_probabilities.html
+++ b/docs/reference/simple_rs_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -164,7 +161,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/strata_and_cluster_rs.html b/docs/reference/strata_and_cluster_rs.html
index ccc6ebf..f701ae5 100644
--- a/docs/reference/strata_and_cluster_rs.html
+++ b/docs/reference/strata_and_cluster_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -257,7 +254,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/strata_and_cluster_rs_probabilities.html b/docs/reference/strata_and_cluster_rs_probabilities.html
index 046957e..0abbc72 100644
--- a/docs/reference/strata_and_cluster_rs_probabilities.html
+++ b/docs/reference/strata_and_cluster_rs_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -264,7 +261,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/strata_rs.html b/docs/reference/strata_rs.html
index e83b987..8962d56 100644
--- a/docs/reference/strata_rs.html
+++ b/docs/reference/strata_rs.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -202,7 +199,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/reference/strata_rs_probabilities.html b/docs/reference/strata_rs_probabilities.html
index 9299bca..8fe51e4 100644
--- a/docs/reference/strata_rs_probabilities.html
+++ b/docs/reference/strata_rs_probabilities.html
@@ -47,7 +47,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">randomizr</a>
+      <a class="navbar-brand" href="../">randomizr</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
@@ -91,10 +91,7 @@
       
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/DeclareDesign/randomizr">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
+  <a></a>
 </li>
       </ul>
     </div><!--/.nav-collapse -->
@@ -195,7 +192,7 @@ <h2>Contents</h2>
 
       <footer>
       <div class="copyright" style="flex:2;">
-  <p>Developed by Alexander Coppock.</p>
+  <p>Developed by Alexander Coppock, Jasper Cooper, Neal Fultz.</p>
   <p>Code is licensed under <a href="https://opensource.org/licenses/mit-license.php">MIT</a> license.</p>
 </div>
 
diff --git a/docs/templates/navbar.html b/docs/templates/navbar.html
index 11df683..51ef926 100644
--- a/docs/templates/navbar.html
+++ b/docs/templates/navbar.html
@@ -7,7 +7,7 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="{{#site}}{{root}}{{/site}}index.html">{{title}}</a>
+      <a class="navbar-brand" href="{{#site}}{{root}}{{/site}}">{{title}}</a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       {{#left}}
diff --git a/index.Rmd b/index.Rmd
index b3c40e1..80f98bd 100644
--- a/index.Rmd
+++ b/index.Rmd
@@ -15,9 +15,11 @@ options(digits = 2)
 
 # randomizr: Easy to use tools for common forms of random assignment and sampling
 
-**randomizr** is designed to make conducting field, lab, survey, or online experiments easier by automating the random assignment process. Social and lab scientists conducting experiments need a process to assign individuals or units of observation to treatment or control wings. Common designs include simple random assignment, complete randomization, block randomization, cluster randomization, and blocked cluster randomization. **randomizr** automates all of these processes and assists scientists in doing transparent, replicable science.
+**randomizr** is designed to make conducting field, lab, survey, or online experiments easier by automating the random assignment process. Social and lab scientists conducting experiments need a process to assign individuals or units of observation to treatment or control wings. Common designs include simple random assignment, complete randomization, block randomization, cluster randomization, and blocked cluster randomization. **randomizr** automates all of these processes and assists scientists in doing transparent, replicable science. We offer **randomizr** for both `R` and `Stata`.
 
-### Installing randomizr
+## randomizr for R
+
+### Installing randomizr for R
 
 Installing the latest production-ready version of **randomizr** in `R` is simple.
 
@@ -32,7 +34,7 @@ install.packages("devtools")
 devtools::install_github("DeclareDesign/randomizr")
 ```
 
-### Getting started
+### Getting started with randomizr for R
 
 **randomizr** has five main random assignment functions, corresponding to the common experimental designs listed above. You can read more about using each of these functions in our [reference library](reference/index.html) or by clicking on the function names: `simple_ra()`, `complete_ra()`, `block_ra()`, `cluster_ra()`, and `block_and_cluster_ra()`.
 
@@ -66,4 +68,31 @@ knitr::kable(table(Z, clust_var))
 
 For more information about all of **randomizr**'s functionality, please see our [online tutorial](articles/randomizr_vignette.html)
 
+## randomizr for Stata
+
+Installing the latest production-ready version of **randomizr** from ssc is easy:
+
+```{r eval=FALSE}
+ssc install randomizr
+```
+
+If you would like to install the latest development release directly from GitHub, run the following code:
+
+```{r eval=FALSE}
+net install randomizr, from(https://raw.githubusercontent.com/DeclareDesign/strandomizr/master/) replace
+```
+
+## Getting started with randomizr for Stata
+
+`complete_ra` (complete randomization) is the workhorse function that will be most appropriate for a large number of experimental situations: it assigns m of N units to treatment:
+
+```{r eval=FALSE}
+ssc install randomizr
+set obs 100
+complete_ra, m(50)
+```
+
+A Stata version of our [online tutorial](articles/srandomizr_vignette.html) is also available.
+
+
 Happy randomizing!
diff --git a/man/.Rapp.history b/man/.Rapp.history
deleted file mode 100644
index e69de29..0000000
diff --git a/vignettes/randomizr_vignette.Rmd b/vignettes/randomizr_vignette.Rmd
index 87da19e..8313b58 100644
--- a/vignettes/randomizr_vignette.Rmd
+++ b/vignettes/randomizr_vignette.Rmd
@@ -5,7 +5,7 @@ output: rmarkdown::html_vignette
 vignette: >
   %\VignetteIndexEntry{Design and Analysis of Experiments with randomizr}
   %\VignetteEngine{knitr::rmarkdown}
-  \usepackage[utf8]{inputenc}
+  %\VignetteEncoding{UTF-8}
 ---
 
 ```{r, echo=FALSE}