diff --git a/docs/tutorial/tutorial.html b/docs/tutorial/tutorial.html index 9f35eff11..076e6b235 100644 --- a/docs/tutorial/tutorial.html +++ b/docs/tutorial/tutorial.html @@ -1818,9 +1818,15 @@

14. Plugins

-To see these plugins at work, find the option "plugins=" at the top of -volvox.conf, and modify it to activate the Aligner and -RestrictionAnnotator plugins: +To see these plugins at work, first make sure that the database files +are up to date with this position in the tutorial. If you are in any +doubt, remove the current contents of the volvox database directory +and replace them with the files volvox_all.gff and volvox_all.fa.

+ +Now find the option "plugins=" at the top of volvox.conf, and modify +it to activate the Aligner and RestrictionAnnotator plugins:

 plugins = Aligner RestrictionAnnotator
@@ -1853,12 +1859,11 @@ 

14. Plugins

The Aligner plugin has some additional configuration that you can perform. We'll look at this now as an example of how to configure -plugins. +plugins. Open up volvox.conf and add the following configuration +section:

-Open up volvox.conf and add the following configuration section: -

 ########################
 # Plugin configuration
@@ -3436,6 +3441,6 @@ 

22. Conclusion

Lincoln D. Stein, lstein@cshl.org
Cold Spring Harbor Laboratory
-Last modified: Thu Jun 24 11:44:10 EDT 2004 +Last modified: Mon Sep 6 16:50:31 EDT 2004 diff --git a/lib/Bio/Graphics/Browser.pm b/lib/Bio/Graphics/Browser.pm index aabfad69f..5fea75532 100644 --- a/lib/Bio/Graphics/Browser.pm +++ b/lib/Bio/Graphics/Browser.pm @@ -1,5 +1,5 @@ package Bio::Graphics::Browser; -# $Id: Browser.pm,v 1.160 2004-09-05 04:36:03 allenday Exp $ +# $Id: Browser.pm,v 1.161 2004-09-06 20:51:02 lstein Exp $ # This package provides methods that support the Generic Genome Browser. # Its main utility for plugin writers is to access the configuration file information @@ -1078,7 +1078,6 @@ sub image_and_map { } else { - my @settings = ($conf->default_style,$conf->i18n_style($label,$lang,$length)); push @settings,(-hilite => $hilite_callback) if $hilite_callback; my $track = $panel->add_track(-glyph => 'generic',@settings);