diff --git a/commit.fish b/commit.sh similarity index 72% rename from commit.fish rename to commit.sh index 88e17c0d..deaf8519 100755 --- a/commit.fish +++ b/commit.sh @@ -1,8 +1,7 @@ -#! /usr/bin/fish +#! /usr/bin/env bash # Assumes the CWD is the root of the MetagenomeScope/ repository. -./minify_files.fish +bash minify_files.fish git add viewer/js/xdot2cy.min.js git add viewer/css/viewer_style.min.css git add viewer/index.min.html -git add electron/index.min.html git commit diff --git a/electron/README.md b/electron/README.md deleted file mode 100644 index c24ca507..00000000 --- a/electron/README.md +++ /dev/null @@ -1,6 +0,0 @@ -This is a tentative desktop version of MetagenomeScope's viewer interface, -usable with [Electron](https://electronjs.org/). - -It's a work in progress -- as always, please -[contact us](https://github.com/marbl/MetagenomeScope/wiki/Contact) if you -have any questions. diff --git a/electron/bubble.png b/electron/bubble.png deleted file mode 100644 index 8a11c25c..00000000 Binary files a/electron/bubble.png and /dev/null differ diff --git a/electron/bubble_fancy.png b/electron/bubble_fancy.png deleted file mode 100644 index 782d4c6d..00000000 Binary files a/electron/bubble_fancy.png and /dev/null differ diff --git a/electron/index.min.html b/electron/index.min.html deleted file mode 100644 index c09a265c..00000000 --- a/electron/index.min.html +++ /dev/null @@ -1,21 +0,0 @@ - - -MetagenomeScope Viewer

File Selection and Setup

 

Standard Mode


SPQR Decomposition Mode


Selected Elements

Nodes 0
Selected Node Information
IDLabelLengthDepthGC ContentIs Repeat?
Edges 0
Selected Edge Information
Src IDTgt IDMultiplicityOrientMeanStd. Dev
Clusters 0
Selected Cluster Information
Cluster TypeNode Count

Search for Nodes


Display Options


Node Colorization


View Scaffolds


Assembly Finishing


Export Graph View


Test Layouts

See here for a list of predefined layouts.

\ No newline at end of file diff --git a/electron/main.js b/electron/main.js deleted file mode 100644 index 18dd6b65..00000000 --- a/electron/main.js +++ /dev/null @@ -1,33 +0,0 @@ -/* Copyright (C) 2017-2018 Marcus Fedarko, Jay Ghurye, Todd Treangen, Mihai Pop - * Authored by Marcus Fedarko - * - * This file is part of MetagenomeScope. - * - * MetagenomeScope is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * MetagenomeScope is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with MetagenomeScope. If not, see . - **** - * This code is run when the Electron app starts. It sets a callback that - * starts a browser window of the MetagenomeScope viewer interface when the - * app's ready. - * - * CODELINK: The bulk of this file's code is based on the tutorial located at - * https://electronjs.org/docs/tutorial/first-app. - */ -const {app, BrowserWindow} = require('electron'); - -function createWindow() { - win = new BrowserWindow({backgroundColor: '#fff', width: 1200, height: 900, - autoHideMenuBar: true, icon: 'bubble_fancy.png'}); - win.loadFile('index.min.html'); -} -app.on('ready', createWindow); diff --git a/electron/package-lock.json b/electron/package-lock.json deleted file mode 100644 index 9ff378f9..00000000 --- a/electron/package-lock.json +++ /dev/null @@ -1,1210 +0,0 @@ -{ - "name": "desktop_mgsc", - "version": "0.0.1", - "lockfileVersion": 1, - "requires": true, - "dependencies": { - "@types/node": { - "version": "10.12.20", - "resolved": "https://registry.npmjs.org/@types/node/-/node-10.12.20.tgz", - "integrity": "sha512-9spv6SklidqxevvZyOUGjZVz4QRXGu2dNaLyXIFzFYZW0AGDykzPRIUFJXTlQXyfzAucddwTcGtJNim8zqSOPA==", - "dev": true - }, - "ajv": { - "version": "6.7.0", - "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.7.0.tgz", - "integrity": "sha512-RZXPviBTtfmtka9n9sy1N5M5b82CbxWIR6HIis4s3WQTXDJamc/0gpCWNGz6EWdWp4DOfjzJfhz/AS9zVPjjWg==", - "dev": true, - "requires": { - "fast-deep-equal": "^2.0.1", - "fast-json-stable-stringify": "^2.0.0", - "json-schema-traverse": "^0.4.1", - "uri-js": "^4.2.2" - } - }, - "ansi-regex": { - "version": "2.1.1", - "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz", - "integrity": "sha1-w7M6te42DYbg5ijwRorn7yfWVN8=", - "dev": true - }, - "array-find-index": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/array-find-index/-/array-find-index-1.0.2.tgz", - "integrity": "sha1-3wEKoSh+Fku9pvlyOwqWoexBh6E=", - "dev": true - }, - "asn1": { - "version": "0.2.4", - "resolved": "https://registry.npmjs.org/asn1/-/asn1-0.2.4.tgz", - "integrity": "sha512-jxwzQpLQjSmWXgwaCZE9Nz+glAG01yF1QnWgbhGwHI5A6FRIEY6IVqtHhIepHqI7/kyEyQEagBC5mBEFlIYvdg==", - "dev": true, - "requires": { - "safer-buffer": "~2.1.0" - } - }, - "assert-plus": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/assert-plus/-/assert-plus-1.0.0.tgz", - "integrity": "sha1-8S4PPF13sLHN2RRpQuTpbB5N1SU=", - "dev": true - }, - "asynckit": { - "version": "0.4.0", - "resolved": "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz", - "integrity": "sha1-x57Zf380y48robyXkLzDZkdLS3k=", - "dev": true - }, - "aws-sign2": { - "version": "0.7.0", - "resolved": "https://registry.npmjs.org/aws-sign2/-/aws-sign2-0.7.0.tgz", - "integrity": "sha1-tG6JCTSpWR8tL2+G1+ap8bP+dqg=", - "dev": true - }, - "aws4": { - "version": "1.8.0", - "resolved": "https://registry.npmjs.org/aws4/-/aws4-1.8.0.tgz", - "integrity": "sha512-ReZxvNHIOv88FlT7rxcXIIC0fPt4KZqZbOlivyWtXLt8ESx84zd3kMC6iK5jVeS2qt+g7ftS7ye4fi06X5rtRQ==", - "dev": true - }, - "bcrypt-pbkdf": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.2.tgz", - "integrity": "sha1-pDAdOJtqQ/m2f/PKEaP2Y342Dp4=", - "dev": true, - "requires": { - "tweetnacl": "^0.14.3" - } - }, - "buffer-from": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/buffer-from/-/buffer-from-1.1.1.tgz", - "integrity": "sha512-MQcXEUbCKtEo7bhqEs6560Hyd4XaovZlO/k9V3hjVUF/zwW7KBVdSK4gIt/bzwS9MbR5qob+F5jusZsb0YQK2A==", - "dev": true - }, - "builtin-modules": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/builtin-modules/-/builtin-modules-1.1.1.tgz", - "integrity": "sha1-Jw8HbFpywC9bZaR9+Uxf46J4iS8=", - "dev": true - }, - "camelcase": { - "version": "2.1.1", - "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-2.1.1.tgz", - "integrity": "sha1-fB0W1nmhu+WcoCys7PsBHiAfWh8=", - "dev": true - }, - "camelcase-keys": { - "version": "2.1.0", - "resolved": "https://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz", - "integrity": "sha1-MIvur/3ygRkFHvodkyITyRuPkuc=", - "dev": true, - "requires": { - "camelcase": "^2.0.0", - "map-obj": "^1.0.0" - } - }, - "caseless": { - "version": "0.12.0", - "resolved": "https://registry.npmjs.org/caseless/-/caseless-0.12.0.tgz", - "integrity": "sha1-G2gcIf+EAzyCZUMJBolCDRhxUdw=", - "dev": true - }, - "code-point-at": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/code-point-at/-/code-point-at-1.1.0.tgz", - "integrity": "sha1-DQcLTQQ6W+ozovGkDi7bPZpMz3c=", - "dev": true - }, - "combined-stream": { - "version": "1.0.7", - "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.7.tgz", - "integrity": "sha512-brWl9y6vOB1xYPZcpZde3N9zDByXTosAeMDo4p1wzo6UMOX4vumB+TP1RZ76sfE6Md68Q0NJSrE/gbezd4Ul+w==", - "dev": true, - "requires": { - "delayed-stream": "~1.0.0" - } - }, - "concat-stream": { - "version": "1.6.2", - "resolved": "https://registry.npmjs.org/concat-stream/-/concat-stream-1.6.2.tgz", - "integrity": "sha512-27HBghJxjiZtIk3Ycvn/4kbJk/1uZuJFfuPEns6LaEvpvG1f0hTea8lilrouyo9mVc2GWdcEZ8OLoGmSADlrCw==", - "dev": true, - "requires": { - "buffer-from": "^1.0.0", - "inherits": "^2.0.3", - "readable-stream": "^2.2.2", - "typedarray": "^0.0.6" - }, - "dependencies": { - "isarray": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/isarray/-/isarray-1.0.0.tgz", - "integrity": "sha1-u5NdSFgsuhaMBoNJV6VKPgcSTxE=", - "dev": true - }, - "readable-stream": { - "version": "2.3.6", - "resolved": "https://registry.npmjs.org/readable-stream/-/readable-stream-2.3.6.tgz", - "integrity": "sha512-tQtKA9WIAhBF3+VLAseyMqZeBjW0AHJoxOtYqSUZNJxauErmLbVm2FW1y+J/YA9dUrAC39ITejlZWhVIwawkKw==", - "dev": true, - "requires": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.3", - "isarray": "~1.0.0", - "process-nextick-args": "~2.0.0", - "safe-buffer": "~5.1.1", - "string_decoder": "~1.1.1", - "util-deprecate": "~1.0.1" - } - }, - "string_decoder": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/string_decoder/-/string_decoder-1.1.1.tgz", - "integrity": "sha512-n/ShnvDi6FHbbVfviro+WojiFzv+s8MPMHBczVePfUpDJLwoLT0ht1l4YwBCbi8pJAveEEdnkHyPyTP/mzRfwg==", - "dev": true, - "requires": { - "safe-buffer": "~5.1.0" - } - } - } - }, - "core-util-is": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/core-util-is/-/core-util-is-1.0.2.tgz", - "integrity": "sha1-tf1UIgqivFq1eqtxQMlAdUUDwac=", - "dev": true - }, - "currently-unhandled": { - "version": "0.4.1", - "resolved": "https://registry.npmjs.org/currently-unhandled/-/currently-unhandled-0.4.1.tgz", - "integrity": "sha1-mI3zP+qxke95mmE2nddsF635V+o=", - "dev": true, - "requires": { - "array-find-index": "^1.0.1" - } - }, - "dashdash": { - "version": "1.14.1", - "resolved": "https://registry.npmjs.org/dashdash/-/dashdash-1.14.1.tgz", - "integrity": "sha1-hTz6D3y+L+1d4gMmuN1YEDX24vA=", - "dev": true, - "requires": { - "assert-plus": "^1.0.0" - } - }, - "debug": { - "version": "3.2.6", - "resolved": "https://registry.npmjs.org/debug/-/debug-3.2.6.tgz", - "integrity": "sha512-mel+jf7nrtEl5Pn1Qx46zARXKDpBbvzezse7p7LqINmdoIk8PYP5SySaxEmYv6TZ0JyEKA1hsCId6DIhgITtWQ==", - "dev": true, - "requires": { - "ms": "^2.1.1" - } - }, - "decamelize": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/decamelize/-/decamelize-1.2.0.tgz", - "integrity": "sha1-9lNNFRSCabIDUue+4m9QH5oZEpA=", - "dev": true - }, - "deep-extend": { - "version": "0.6.0", - "resolved": "https://registry.npmjs.org/deep-extend/-/deep-extend-0.6.0.tgz", - "integrity": "sha512-LOHxIOaPYdHlJRtCQfDIVZtfw/ufM8+rVj649RIHzcm/vGwQRXFt6OPqIFWsm2XEMrNIEtWR64sY1LEKD2vAOA==", - "dev": true - }, - "delayed-stream": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/delayed-stream/-/delayed-stream-1.0.0.tgz", - "integrity": "sha1-3zrhmayt+31ECqrgsp4icrJOxhk=", - "dev": true - }, - "ecc-jsbn": { - "version": "0.1.2", - "resolved": "https://registry.npmjs.org/ecc-jsbn/-/ecc-jsbn-0.1.2.tgz", - "integrity": "sha1-OoOpBOVDUyh4dMVkt1SThoSamMk=", - "dev": true, - "requires": { - "jsbn": "~0.1.0", - "safer-buffer": "^2.1.0" - } - }, - "electron": { - "version": "4.0.3", - "resolved": "https://registry.npmjs.org/electron/-/electron-4.0.3.tgz", - "integrity": "sha512-wOBYnlv3Xgbwh9DAHBktP3sQcbCBuXMQi1NzPH3EMnbdYNqj+FnTzVLq0RYp0uSzdjR3fhAZ/E6wFSMLaAc5iw==", - "dev": true, - "requires": { - "@types/node": "^10.12.18", - "electron-download": "^4.1.0", - "extract-zip": "^1.0.3" - } - }, - "electron-download": { - "version": "4.1.1", - "resolved": "https://registry.npmjs.org/electron-download/-/electron-download-4.1.1.tgz", - "integrity": "sha512-FjEWG9Jb/ppK/2zToP+U5dds114fM1ZOJqMAR4aXXL5CvyPE9fiqBK/9YcwC9poIFQTEJk/EM/zyRwziziRZrg==", - "dev": true, - "requires": { - "debug": "^3.0.0", - "env-paths": "^1.0.0", - "fs-extra": "^4.0.1", - "minimist": "^1.2.0", - "nugget": "^2.0.1", - "path-exists": "^3.0.0", - "rc": "^1.2.1", - "semver": "^5.4.1", - "sumchecker": "^2.0.2" - } - }, - "env-paths": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/env-paths/-/env-paths-1.0.0.tgz", - "integrity": "sha1-QWgTO0K7BcOKNbGuQ5fIKYqzaeA=", - "dev": true - }, - "error-ex": { - "version": "1.3.2", - "resolved": "https://registry.npmjs.org/error-ex/-/error-ex-1.3.2.tgz", - "integrity": "sha512-7dFHNmqeFSEt2ZBsCriorKnn3Z2pj+fd9kmI6QoWw4//DL+icEBfc0U7qJCisqrTsKTjw4fNFy2pW9OqStD84g==", - "dev": true, - "requires": { - "is-arrayish": "^0.2.1" - } - }, - "extend": { - "version": "3.0.2", - "resolved": "https://registry.npmjs.org/extend/-/extend-3.0.2.tgz", - "integrity": "sha512-fjquC59cD7CyW6urNXK0FBufkZcoiGG80wTuPujX590cB5Ttln20E2UB4S/WARVqhXffZl2LNgS+gQdPIIim/g==", - "dev": true - }, - "extract-zip": { - "version": "1.6.7", - "resolved": "https://registry.npmjs.org/extract-zip/-/extract-zip-1.6.7.tgz", - "integrity": "sha1-qEC0uK9kAyZMjbV/Txp0Mz74H+k=", - "dev": true, - "requires": { - "concat-stream": "1.6.2", - "debug": "2.6.9", - "mkdirp": "0.5.1", - "yauzl": "2.4.1" - }, - "dependencies": { - "debug": { - "version": "2.6.9", - "resolved": "https://registry.npmjs.org/debug/-/debug-2.6.9.tgz", - "integrity": "sha512-bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA==", - "dev": true, - "requires": { - "ms": "2.0.0" - } - }, - "ms": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz", - "integrity": "sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=", - "dev": true - } - } - }, - "extsprintf": { - "version": "1.3.0", - "resolved": "https://registry.npmjs.org/extsprintf/-/extsprintf-1.3.0.tgz", - "integrity": "sha1-lpGEQOMEGnpBT4xS48V06zw+HgU=", - "dev": true - }, - "fast-deep-equal": { - "version": "2.0.1", - "resolved": "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-2.0.1.tgz", - "integrity": "sha1-ewUhjd+WZ79/Nwv3/bLLFf3Qqkk=", - "dev": true - }, - "fast-json-stable-stringify": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/fast-json-stable-stringify/-/fast-json-stable-stringify-2.0.0.tgz", - "integrity": "sha1-1RQsDK7msRifh9OnYREGT4bIu/I=", - "dev": true - }, - "fd-slicer": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/fd-slicer/-/fd-slicer-1.0.1.tgz", - "integrity": "sha1-i1vL2ewyfFBBv5qwI/1nUPEXfmU=", - "dev": true, - "requires": { - "pend": "~1.2.0" - } - }, - "find-up": { - "version": "1.1.2", - "resolved": "https://registry.npmjs.org/find-up/-/find-up-1.1.2.tgz", - "integrity": "sha1-ay6YIrGizgpgq2TWEOzK1TyyTQ8=", - "dev": true, - "requires": { - "path-exists": "^2.0.0", - "pinkie-promise": "^2.0.0" - }, - "dependencies": { - "path-exists": { - "version": "2.1.0", - "resolved": "https://registry.npmjs.org/path-exists/-/path-exists-2.1.0.tgz", - "integrity": "sha1-D+tsZPD8UY2adU3V77YscCJ2H0s=", - "dev": true, - "requires": { - "pinkie-promise": "^2.0.0" - } - } - } - }, - "forever-agent": { - "version": "0.6.1", - "resolved": "https://registry.npmjs.org/forever-agent/-/forever-agent-0.6.1.tgz", - "integrity": "sha1-+8cfDEGt6zf5bFd60e1C2P2sypE=", - "dev": true - }, - "form-data": { - "version": "2.3.3", - "resolved": "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz", - "integrity": "sha512-1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ==", - "dev": true, - "requires": { - "asynckit": "^0.4.0", - "combined-stream": "^1.0.6", - "mime-types": "^2.1.12" - } - }, - "fs-extra": { - "version": "4.0.3", - "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-4.0.3.tgz", - "integrity": "sha512-q6rbdDd1o2mAnQreO7YADIxf/Whx4AHBiRf6d+/cVT8h44ss+lHgxf1FemcqDnQt9X3ct4McHr+JMGlYSsK7Cg==", - "dev": true, - "requires": { - "graceful-fs": "^4.1.2", - "jsonfile": "^4.0.0", - "universalify": "^0.1.0" - } - }, - "get-stdin": { - "version": "4.0.1", - "resolved": "https://registry.npmjs.org/get-stdin/-/get-stdin-4.0.1.tgz", - "integrity": "sha1-uWjGsKBDhDJJAui/Gl3zJXmkUP4=", - "dev": true - }, - "getpass": { - "version": "0.1.7", - "resolved": "https://registry.npmjs.org/getpass/-/getpass-0.1.7.tgz", - "integrity": "sha1-Xv+OPmhNVprkyysSgmBOi6YhSfo=", - "dev": true, - "requires": { - "assert-plus": "^1.0.0" - } - }, - "graceful-fs": { - "version": "4.1.15", - "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz", - "integrity": "sha512-6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA==", - "dev": true - }, - "har-schema": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/har-schema/-/har-schema-2.0.0.tgz", - "integrity": "sha1-qUwiJOvKwEeCoNkDVSHyRzW37JI=", - "dev": true - }, - "har-validator": { - "version": "5.1.3", - "resolved": "https://registry.npmjs.org/har-validator/-/har-validator-5.1.3.tgz", - "integrity": "sha512-sNvOCzEQNr/qrvJgc3UG/kD4QtlHycrzwS+6mfTrrSq97BvaYcPZZI1ZSqGSPR73Cxn4LKTD4PttRwfU7jWq5g==", - "dev": true, - "requires": { - "ajv": "^6.5.5", - "har-schema": "^2.0.0" - } - }, - "hosted-git-info": { - "version": "2.7.1", - "resolved": "https://registry.npmjs.org/hosted-git-info/-/hosted-git-info-2.7.1.tgz", - "integrity": "sha512-7T/BxH19zbcCTa8XkMlbK5lTo1WtgkFi3GvdWEyNuc4Vex7/9Dqbnpsf4JMydcfj9HCg4zUWFTL3Za6lapg5/w==", - "dev": true - }, - "http-signature": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/http-signature/-/http-signature-1.2.0.tgz", - "integrity": "sha1-muzZJRFHcvPZW2WmCruPfBj7rOE=", - "dev": true, - "requires": { - "assert-plus": "^1.0.0", - "jsprim": "^1.2.2", - "sshpk": "^1.7.0" - } - }, - "indent-string": { - "version": "2.1.0", - "resolved": "https://registry.npmjs.org/indent-string/-/indent-string-2.1.0.tgz", - "integrity": "sha1-ji1INIdCEhtKghi3oTfppSBJ3IA=", - "dev": true, - "requires": { - "repeating": "^2.0.0" - } - }, - "inherits": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/inherits/-/inherits-2.0.3.tgz", - "integrity": "sha1-Yzwsg+PaQqUC9SRmAiSA9CCCYd4=", - "dev": true - }, - "ini": { - "version": "1.3.5", - "resolved": "https://registry.npmjs.org/ini/-/ini-1.3.5.tgz", - "integrity": "sha512-RZY5huIKCMRWDUqZlEi72f/lmXKMvuszcMBduliQ3nnWbx9X/ZBQO7DijMEYS9EhHBb2qacRUMtC7svLwe0lcw==", - "dev": true - }, - "is-arrayish": { - "version": "0.2.1", - "resolved": "https://registry.npmjs.org/is-arrayish/-/is-arrayish-0.2.1.tgz", - "integrity": "sha1-d8mYQFJ6qOyxqLppe4BkWnqSap0=", - "dev": true - }, - "is-builtin-module": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/is-builtin-module/-/is-builtin-module-1.0.0.tgz", - "integrity": "sha1-VAVy0096wxGfj3bDDLwbHgN6/74=", - "dev": true, - "requires": { - "builtin-modules": "^1.0.0" - } - }, - "is-finite": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/is-finite/-/is-finite-1.0.2.tgz", - "integrity": "sha1-zGZ3aVYCvlUO8R6LSqYwU0K20Ko=", - "dev": true, - "requires": { - "number-is-nan": "^1.0.0" - } - }, - "is-fullwidth-code-point": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-1.0.0.tgz", - "integrity": "sha1-754xOG8DGn8NZDr4L95QxFfvAMs=", - "dev": true, - "requires": { - "number-is-nan": "^1.0.0" - } - }, - "is-typedarray": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/is-typedarray/-/is-typedarray-1.0.0.tgz", - "integrity": "sha1-5HnICFjfDBsR3dppQPlgEfzaSpo=", - "dev": true - }, - "is-utf8": { - "version": "0.2.1", - "resolved": "https://registry.npmjs.org/is-utf8/-/is-utf8-0.2.1.tgz", - "integrity": "sha1-Sw2hRCEE0bM2NA6AeX6GXPOffXI=", - "dev": true - }, - "isarray": { - "version": "0.0.1", - "resolved": "https://registry.npmjs.org/isarray/-/isarray-0.0.1.tgz", - "integrity": "sha1-ihis/Kmo9Bd+Cav8YDiTmwXR7t8=", - "dev": true - }, - "isstream": { - "version": "0.1.2", - "resolved": "https://registry.npmjs.org/isstream/-/isstream-0.1.2.tgz", - "integrity": "sha1-R+Y/evVa+m+S4VAOaQ64uFKcCZo=", - "dev": true - }, - "jsbn": { - "version": "0.1.1", - "resolved": "https://registry.npmjs.org/jsbn/-/jsbn-0.1.1.tgz", - "integrity": "sha1-peZUwuWi3rXyAdls77yoDA7y9RM=", - "dev": true - }, - "json-schema": { - "version": "0.2.3", - "resolved": "https://registry.npmjs.org/json-schema/-/json-schema-0.2.3.tgz", - "integrity": "sha1-tIDIkuWaLwWVTOcnvT8qTogvnhM=", - "dev": true - }, - "json-schema-traverse": { - "version": "0.4.1", - "resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-0.4.1.tgz", - "integrity": "sha512-xbbCH5dCYU5T8LcEhhuh7HJ88HXuW3qsI3Y0zOZFKfZEHcpWiHU/Jxzk629Brsab/mMiHQti9wMP+845RPe3Vg==", - "dev": true - }, - "json-stringify-safe": { - "version": "5.0.1", - "resolved": "https://registry.npmjs.org/json-stringify-safe/-/json-stringify-safe-5.0.1.tgz", - "integrity": "sha1-Epai1Y/UXxmg9s4B1lcB4sc1tus=", - "dev": true - }, - "jsonfile": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/jsonfile/-/jsonfile-4.0.0.tgz", - "integrity": "sha1-h3Gq4HmbZAdrdmQPygWPnBDjPss=", - "dev": true, - "requires": { - "graceful-fs": "^4.1.6" - } - }, - "jsprim": { - "version": "1.4.1", - "resolved": "https://registry.npmjs.org/jsprim/-/jsprim-1.4.1.tgz", - "integrity": "sha1-MT5mvB5cwG5Di8G3SZwuXFastqI=", - "dev": true, - "requires": { - "assert-plus": "1.0.0", - "extsprintf": "1.3.0", - "json-schema": "0.2.3", - "verror": "1.10.0" - } - }, - "load-json-file": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/load-json-file/-/load-json-file-1.1.0.tgz", - "integrity": "sha1-lWkFcI1YtLq0wiYbBPWfMcmTdMA=", - "dev": true, - "requires": { - "graceful-fs": "^4.1.2", - "parse-json": "^2.2.0", - "pify": "^2.0.0", - "pinkie-promise": "^2.0.0", - "strip-bom": "^2.0.0" - } - }, - "loud-rejection": { - "version": "1.6.0", - "resolved": "https://registry.npmjs.org/loud-rejection/-/loud-rejection-1.6.0.tgz", - "integrity": "sha1-W0b4AUft7leIcPCG0Eghz5mOVR8=", - "dev": true, - "requires": { - "currently-unhandled": "^0.4.1", - "signal-exit": "^3.0.0" - } - }, - "map-obj": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/map-obj/-/map-obj-1.0.1.tgz", - "integrity": "sha1-2TPOuSBdgr3PSIb2dCvcK03qFG0=", - "dev": true - }, - "meow": { - "version": "3.7.0", - "resolved": "https://registry.npmjs.org/meow/-/meow-3.7.0.tgz", - "integrity": "sha1-cstmi0JSKCkKu/qFaJJYcwioAfs=", - "dev": true, - "requires": { - "camelcase-keys": "^2.0.0", - "decamelize": "^1.1.2", - "loud-rejection": "^1.0.0", - "map-obj": "^1.0.1", - "minimist": "^1.1.3", - "normalize-package-data": "^2.3.4", - "object-assign": "^4.0.1", - "read-pkg-up": "^1.0.1", - "redent": "^1.0.0", - "trim-newlines": "^1.0.0" - } - }, - "mime-db": { - "version": "1.37.0", - "resolved": "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz", - "integrity": "sha512-R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg==", - "dev": true - }, - "mime-types": { - "version": "2.1.21", - "resolved": "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz", - "integrity": "sha512-3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg==", - "dev": true, - "requires": { - "mime-db": "~1.37.0" - } - }, - "minimist": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/minimist/-/minimist-1.2.0.tgz", - "integrity": "sha1-o1AIsg9BOD7sH7kU9M1d95omQoQ=", - "dev": true - }, - "mkdirp": { - "version": "0.5.1", - "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz", - "integrity": "sha1-MAV0OOrGz3+MR2fzhkjWaX11yQM=", - "dev": true, - "requires": { - "minimist": "0.0.8" - }, - "dependencies": { - "minimist": { - "version": "0.0.8", - "resolved": "https://registry.npmjs.org/minimist/-/minimist-0.0.8.tgz", - "integrity": "sha1-hX/Kv8M5fSYluCKCYuhqp6ARsF0=", - "dev": true - } - } - }, - "ms": { - "version": "2.1.1", - "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.1.tgz", - "integrity": "sha512-tgp+dl5cGk28utYktBsrFqA7HKgrhgPsg6Z/EfhWI4gl1Hwq8B/GmY/0oXZ6nF8hDVesS/FpnYaD/kOWhYQvyg==", - "dev": true - }, - "normalize-package-data": { - "version": "2.4.2", - "resolved": "https://registry.npmjs.org/normalize-package-data/-/normalize-package-data-2.4.2.tgz", - "integrity": "sha512-YcMnjqeoUckXTPKZSAsPjUPLxH85XotbpqK3w4RyCwdFQSU5FxxBys8buehkSfg0j9fKvV1hn7O0+8reEgkAiw==", - "dev": true, - "requires": { - "hosted-git-info": "^2.1.4", - "is-builtin-module": "^1.0.0", - "semver": "2 || 3 || 4 || 5", - "validate-npm-package-license": "^3.0.1" - } - }, - "nugget": { - "version": "2.0.1", - "resolved": "https://registry.npmjs.org/nugget/-/nugget-2.0.1.tgz", - "integrity": "sha1-IBCVpIfhrTYIGzQy+jytpPjQcbA=", - "dev": true, - "requires": { - "debug": "^2.1.3", - "minimist": "^1.1.0", - "pretty-bytes": "^1.0.2", - "progress-stream": "^1.1.0", - "request": "^2.45.0", - "single-line-log": "^1.1.2", - "throttleit": "0.0.2" - }, - "dependencies": { - "debug": { - "version": "2.6.9", - "resolved": "https://registry.npmjs.org/debug/-/debug-2.6.9.tgz", - "integrity": "sha512-bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA==", - "dev": true, - "requires": { - "ms": "2.0.0" - } - }, - "ms": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz", - "integrity": "sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=", - "dev": true - } - } - }, - "number-is-nan": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/number-is-nan/-/number-is-nan-1.0.1.tgz", - "integrity": "sha1-CXtgK1NCKlIsGvuHkDGDNpQaAR0=", - "dev": true - }, - "oauth-sign": { - "version": "0.9.0", - "resolved": "https://registry.npmjs.org/oauth-sign/-/oauth-sign-0.9.0.tgz", - "integrity": "sha512-fexhUFFPTGV8ybAtSIGbV6gOkSv8UtRbDBnAyLQw4QPKkgNlsH2ByPGtMUqdWkos6YCRmAqViwgZrJc/mRDzZQ==", - "dev": true - }, - "object-assign": { - "version": "4.1.1", - "resolved": "https://registry.npmjs.org/object-assign/-/object-assign-4.1.1.tgz", - "integrity": "sha1-IQmtx5ZYh8/AXLvUQsrIv7s2CGM=", - "dev": true - }, - "object-keys": { - "version": "0.4.0", - "resolved": "https://registry.npmjs.org/object-keys/-/object-keys-0.4.0.tgz", - "integrity": "sha1-KKaq50KN0sOpLz2V8hM13SBOAzY=", - "dev": true - }, - "parse-json": { - "version": "2.2.0", - "resolved": "https://registry.npmjs.org/parse-json/-/parse-json-2.2.0.tgz", - "integrity": "sha1-9ID0BDTvgHQfhGkJn43qGPVaTck=", - "dev": true, - "requires": { - "error-ex": "^1.2.0" - } - }, - "path-exists": { - "version": "3.0.0", - "resolved": "https://registry.npmjs.org/path-exists/-/path-exists-3.0.0.tgz", - "integrity": "sha1-zg6+ql94yxiSXqfYENe1mwEP1RU=", - "dev": true - }, - "path-type": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/path-type/-/path-type-1.1.0.tgz", - "integrity": "sha1-WcRPfuSR2nBNpBXaWkBwuk+P5EE=", - "dev": true, - "requires": { - "graceful-fs": "^4.1.2", - "pify": "^2.0.0", - "pinkie-promise": "^2.0.0" - } - }, - "pend": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/pend/-/pend-1.2.0.tgz", - "integrity": "sha1-elfrVQpng/kRUzH89GY9XI4AelA=", - "dev": true - }, - "performance-now": { - "version": "2.1.0", - "resolved": "https://registry.npmjs.org/performance-now/-/performance-now-2.1.0.tgz", - "integrity": "sha1-Ywn04OX6kT7BxpMHrjZLSzd8nns=", - "dev": true - }, - "pify": { - "version": "2.3.0", - "resolved": "https://registry.npmjs.org/pify/-/pify-2.3.0.tgz", - "integrity": "sha1-7RQaasBDqEnqWISY59yosVMw6Qw=", - "dev": true - }, - "pinkie": { - "version": "2.0.4", - "resolved": "https://registry.npmjs.org/pinkie/-/pinkie-2.0.4.tgz", - "integrity": "sha1-clVrgM+g1IqXToDnckjoDtT3+HA=", - "dev": true - }, - "pinkie-promise": { - "version": "2.0.1", - "resolved": "https://registry.npmjs.org/pinkie-promise/-/pinkie-promise-2.0.1.tgz", - "integrity": "sha1-ITXW36ejWMBprJsXh3YogihFD/o=", - "dev": true, - "requires": { - "pinkie": "^2.0.0" - } - }, - "pretty-bytes": { - "version": "1.0.4", - "resolved": "https://registry.npmjs.org/pretty-bytes/-/pretty-bytes-1.0.4.tgz", - "integrity": "sha1-CiLoIQYJrTVUL4yNXSFZr/B1HIQ=", - "dev": true, - "requires": { - "get-stdin": "^4.0.1", - "meow": "^3.1.0" - } - }, - "process-nextick-args": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/process-nextick-args/-/process-nextick-args-2.0.0.tgz", - "integrity": "sha512-MtEC1TqN0EU5nephaJ4rAtThHtC86dNN9qCuEhtshvpVBkAW5ZO7BASN9REnF9eoXGcRub+pFuKEpOHE+HbEMw==", - "dev": true - }, - "progress-stream": { - "version": "1.2.0", - "resolved": "https://registry.npmjs.org/progress-stream/-/progress-stream-1.2.0.tgz", - "integrity": "sha1-LNPP6jO6OonJwSHsM0er6asSX3c=", - "dev": true, - "requires": { - "speedometer": "~0.1.2", - "through2": "~0.2.3" - } - }, - "psl": { - "version": "1.1.31", - "resolved": "https://registry.npmjs.org/psl/-/psl-1.1.31.tgz", - "integrity": "sha512-/6pt4+C+T+wZUieKR620OpzN/LlnNKuWjy1iFLQ/UG35JqHlR/89MP1d96dUfkf6Dne3TuLQzOYEYshJ+Hx8mw==", - "dev": true - }, - "punycode": { - "version": "2.1.1", - "resolved": "https://registry.npmjs.org/punycode/-/punycode-2.1.1.tgz", - "integrity": "sha512-XRsRjdf+j5ml+y/6GKHPZbrF/8p2Yga0JPtdqTIY2Xe5ohJPD9saDJJLPvp9+NSBprVvevdXZybnj2cv8OEd0A==", - "dev": true - }, - "qs": { - "version": "6.5.2", - "resolved": "https://registry.npmjs.org/qs/-/qs-6.5.2.tgz", - "integrity": "sha512-N5ZAX4/LxJmF+7wN74pUD6qAh9/wnvdQcjq9TZjevvXzSUo7bfmw91saqMjzGS2xq91/odN2dW/WOl7qQHNDGA==", - "dev": true - }, - "rc": { - "version": "1.2.8", - "resolved": "https://registry.npmjs.org/rc/-/rc-1.2.8.tgz", - "integrity": "sha512-y3bGgqKj3QBdxLbLkomlohkvsA8gdAiUQlSBJnBhfn+BPxg4bc62d8TcBW15wavDfgexCgccckhcZvywyQYPOw==", - "dev": true, - "requires": { - "deep-extend": "^0.6.0", - "ini": "~1.3.0", - "minimist": "^1.2.0", - "strip-json-comments": "~2.0.1" - } - }, - "read-pkg": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/read-pkg/-/read-pkg-1.1.0.tgz", - "integrity": "sha1-9f+qXs0pyzHAR0vKfXVra7KePyg=", - "dev": true, - "requires": { - "load-json-file": "^1.0.0", - "normalize-package-data": "^2.3.2", - "path-type": "^1.0.0" - } - }, - "read-pkg-up": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/read-pkg-up/-/read-pkg-up-1.0.1.tgz", - "integrity": "sha1-nWPBMnbAZZGNV/ACpX9AobZD+wI=", - "dev": true, - "requires": { - "find-up": "^1.0.0", - "read-pkg": "^1.0.0" - } - }, - "readable-stream": { - "version": "1.1.14", - "resolved": "https://registry.npmjs.org/readable-stream/-/readable-stream-1.1.14.tgz", - "integrity": "sha1-fPTFTvZI44EwhMY23SB54WbAgdk=", - "dev": true, - "requires": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.1", - "isarray": "0.0.1", - "string_decoder": "~0.10.x" - } - }, - "redent": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/redent/-/redent-1.0.0.tgz", - "integrity": "sha1-z5Fqsf1fHxbfsggi3W7H9zDCr94=", - "dev": true, - "requires": { - "indent-string": "^2.1.0", - "strip-indent": "^1.0.1" - } - }, - "repeating": { - "version": "2.0.1", - "resolved": "https://registry.npmjs.org/repeating/-/repeating-2.0.1.tgz", - "integrity": "sha1-UhTFOpJtNVJwdSf7q0FdvAjQbdo=", - "dev": true, - "requires": { - "is-finite": "^1.0.0" - } - }, - "request": { - "version": "2.88.0", - "resolved": "https://registry.npmjs.org/request/-/request-2.88.0.tgz", - "integrity": "sha512-NAqBSrijGLZdM0WZNsInLJpkJokL72XYjUpnB0iwsRgxh7dB6COrHnTBNwN0E+lHDAJzu7kLAkDeY08z2/A0hg==", - "dev": true, - "requires": { - "aws-sign2": "~0.7.0", - "aws4": "^1.8.0", - "caseless": "~0.12.0", - "combined-stream": "~1.0.6", - "extend": "~3.0.2", - "forever-agent": "~0.6.1", - "form-data": "~2.3.2", - "har-validator": "~5.1.0", - "http-signature": "~1.2.0", - "is-typedarray": "~1.0.0", - "isstream": "~0.1.2", - "json-stringify-safe": "~5.0.1", - "mime-types": "~2.1.19", - "oauth-sign": "~0.9.0", - "performance-now": "^2.1.0", - "qs": "~6.5.2", - "safe-buffer": "^5.1.2", - "tough-cookie": "~2.4.3", - "tunnel-agent": "^0.6.0", - "uuid": "^3.3.2" - } - }, - "safe-buffer": { - "version": "5.1.2", - "resolved": "https://registry.npmjs.org/safe-buffer/-/safe-buffer-5.1.2.tgz", - "integrity": "sha512-Gd2UZBJDkXlY7GbJxfsE8/nvKkUEU1G38c1siN6QP6a9PT9MmHB8GnpscSmMJSoF8LOIrt8ud/wPtojys4G6+g==", - "dev": true - }, - "safer-buffer": { - "version": "2.1.2", - "resolved": "https://registry.npmjs.org/safer-buffer/-/safer-buffer-2.1.2.tgz", - "integrity": "sha512-YZo3K82SD7Riyi0E1EQPojLz7kpepnSQI9IyPbHHg1XXXevb5dJI7tpyN2ADxGcQbHG7vcyRHk0cbwqcQriUtg==", - "dev": true - }, - "semver": { - "version": "5.6.0", - "resolved": "https://registry.npmjs.org/semver/-/semver-5.6.0.tgz", - "integrity": "sha512-RS9R6R35NYgQn++fkDWaOmqGoj4Ek9gGs+DPxNUZKuwE183xjJroKvyo1IzVFeXvUrvmALy6FWD5xrdJT25gMg==", - "dev": true - }, - "signal-exit": { - "version": "3.0.2", - "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.2.tgz", - "integrity": "sha1-tf3AjxKH6hF4Yo5BXiUTK3NkbG0=", - "dev": true - }, - "single-line-log": { - "version": "1.1.2", - "resolved": "https://registry.npmjs.org/single-line-log/-/single-line-log-1.1.2.tgz", - "integrity": "sha1-wvg/Jzo+GhbtsJlWYdoO1e8DM2Q=", - "dev": true, - "requires": { - "string-width": "^1.0.1" - } - }, - "spdx-correct": { - "version": "3.1.0", - "resolved": "https://registry.npmjs.org/spdx-correct/-/spdx-correct-3.1.0.tgz", - "integrity": "sha512-lr2EZCctC2BNR7j7WzJ2FpDznxky1sjfxvvYEyzxNyb6lZXHODmEoJeFu4JupYlkfha1KZpJyoqiJ7pgA1qq8Q==", - "dev": true, - "requires": { - "spdx-expression-parse": "^3.0.0", - "spdx-license-ids": "^3.0.0" - } - }, - "spdx-exceptions": { - "version": "2.2.0", - "resolved": "https://registry.npmjs.org/spdx-exceptions/-/spdx-exceptions-2.2.0.tgz", - "integrity": "sha512-2XQACfElKi9SlVb1CYadKDXvoajPgBVPn/gOQLrTvHdElaVhr7ZEbqJaRnJLVNeaI4cMEAgVCeBMKF6MWRDCRA==", - "dev": true - }, - "spdx-expression-parse": { - "version": "3.0.0", - "resolved": "https://registry.npmjs.org/spdx-expression-parse/-/spdx-expression-parse-3.0.0.tgz", - "integrity": "sha512-Yg6D3XpRD4kkOmTpdgbUiEJFKghJH03fiC1OPll5h/0sO6neh2jqRDVHOQ4o/LMea0tgCkbMgea5ip/e+MkWyg==", - "dev": true, - "requires": { - "spdx-exceptions": "^2.1.0", - "spdx-license-ids": "^3.0.0" - } - }, - "spdx-license-ids": { - "version": "3.0.3", - "resolved": "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.3.tgz", - "integrity": "sha512-uBIcIl3Ih6Phe3XHK1NqboJLdGfwr1UN3k6wSD1dZpmPsIkb8AGNbZYJ1fOBk834+Gxy8rpfDxrS6XLEMZMY2g==", - "dev": true - }, - "speedometer": { - "version": "0.1.4", - "resolved": "https://registry.npmjs.org/speedometer/-/speedometer-0.1.4.tgz", - "integrity": "sha1-mHbb0qFp0xFUAtSObqYynIgWpQ0=", - "dev": true - }, - "sshpk": { - "version": "1.16.1", - "resolved": "https://registry.npmjs.org/sshpk/-/sshpk-1.16.1.tgz", - "integrity": "sha512-HXXqVUq7+pcKeLqqZj6mHFUMvXtOJt1uoUx09pFW6011inTMxqI8BA8PM95myrIyyKwdnzjdFjLiE6KBPVtJIg==", - "dev": true, - "requires": { - "asn1": "~0.2.3", - "assert-plus": "^1.0.0", - "bcrypt-pbkdf": "^1.0.0", - "dashdash": "^1.12.0", - "ecc-jsbn": "~0.1.1", - "getpass": "^0.1.1", - "jsbn": "~0.1.0", - "safer-buffer": "^2.0.2", - "tweetnacl": "~0.14.0" - } - }, - "string-width": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/string-width/-/string-width-1.0.2.tgz", - "integrity": "sha1-EYvfW4zcUaKn5w0hHgfisLmxB9M=", - "dev": true, - "requires": { - "code-point-at": "^1.0.0", - "is-fullwidth-code-point": "^1.0.0", - "strip-ansi": "^3.0.0" - } - }, - "string_decoder": { - "version": "0.10.31", - "resolved": "https://registry.npmjs.org/string_decoder/-/string_decoder-0.10.31.tgz", - "integrity": "sha1-YuIDvEF2bGwoyfyEMB2rHFMQ+pQ=", - "dev": true - }, - "strip-ansi": { - "version": "3.0.1", - "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-3.0.1.tgz", - "integrity": "sha1-ajhfuIU9lS1f8F0Oiq+UJ43GPc8=", - "dev": true, - "requires": { - "ansi-regex": "^2.0.0" - } - }, - "strip-bom": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/strip-bom/-/strip-bom-2.0.0.tgz", - "integrity": "sha1-YhmoVhZSBJHzV4i9vxRHqZx+aw4=", - "dev": true, - "requires": { - "is-utf8": "^0.2.0" - } - }, - "strip-indent": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/strip-indent/-/strip-indent-1.0.1.tgz", - "integrity": "sha1-DHlipq3vp7vUrDZkYKY4VSrhoKI=", - "dev": true, - "requires": { - "get-stdin": "^4.0.1" - } - }, - "strip-json-comments": { - "version": "2.0.1", - "resolved": "https://registry.npmjs.org/strip-json-comments/-/strip-json-comments-2.0.1.tgz", - "integrity": "sha1-PFMZQukIwml8DsNEhYwobHygpgo=", - "dev": true - }, - "sumchecker": { - "version": "2.0.2", - "resolved": "https://registry.npmjs.org/sumchecker/-/sumchecker-2.0.2.tgz", - "integrity": "sha1-D0LBDl0F2l1C7qPlbDOZo31sWz4=", - "dev": true, - "requires": { - "debug": "^2.2.0" - }, - "dependencies": { - "debug": { - "version": "2.6.9", - "resolved": "https://registry.npmjs.org/debug/-/debug-2.6.9.tgz", - "integrity": "sha512-bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA==", - "dev": true, - "requires": { - "ms": "2.0.0" - } - }, - "ms": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz", - "integrity": "sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g=", - "dev": true - } - } - }, - "throttleit": { - "version": "0.0.2", - "resolved": "https://registry.npmjs.org/throttleit/-/throttleit-0.0.2.tgz", - "integrity": "sha1-z+34jmDADdlpe2H90qg0OptoDq8=", - "dev": true - }, - "through2": { - "version": "0.2.3", - "resolved": "https://registry.npmjs.org/through2/-/through2-0.2.3.tgz", - "integrity": "sha1-6zKE2k6jEbbMis42U3SKUqvyWj8=", - "dev": true, - "requires": { - "readable-stream": "~1.1.9", - "xtend": "~2.1.1" - } - }, - "tough-cookie": { - "version": "2.4.3", - "resolved": "https://registry.npmjs.org/tough-cookie/-/tough-cookie-2.4.3.tgz", - "integrity": "sha512-Q5srk/4vDM54WJsJio3XNn6K2sCG+CQ8G5Wz6bZhRZoAe/+TxjWB/GlFAnYEbkYVlON9FMk/fE3h2RLpPXo4lQ==", - "dev": true, - "requires": { - "psl": "^1.1.24", - "punycode": "^1.4.1" - }, - "dependencies": { - "punycode": { - "version": "1.4.1", - "resolved": "https://registry.npmjs.org/punycode/-/punycode-1.4.1.tgz", - "integrity": "sha1-wNWmOycYgArY4esPpSachN1BhF4=", - "dev": true - } - } - }, - "trim-newlines": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/trim-newlines/-/trim-newlines-1.0.0.tgz", - "integrity": "sha1-WIeWa7WCpFA6QetST301ARgVphM=", - "dev": true - }, - "tunnel-agent": { - "version": "0.6.0", - "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", - "integrity": "sha1-J6XeoGs2sEoKmWZ3SykIaPD8QP0=", - "dev": true, - "requires": { - "safe-buffer": "^5.0.1" - } - }, - "tweetnacl": { - "version": "0.14.5", - "resolved": "https://registry.npmjs.org/tweetnacl/-/tweetnacl-0.14.5.tgz", - "integrity": "sha1-WuaBd/GS1EViadEIr6k/+HQ/T2Q=", - "dev": true - }, - "typedarray": { - "version": "0.0.6", - "resolved": "https://registry.npmjs.org/typedarray/-/typedarray-0.0.6.tgz", - "integrity": "sha1-hnrHTjhkGHsdPUfZlqeOxciDB3c=", - "dev": true - }, - "universalify": { - "version": "0.1.2", - "resolved": "https://registry.npmjs.org/universalify/-/universalify-0.1.2.tgz", - "integrity": "sha512-rBJeI5CXAlmy1pV+617WB9J63U6XcazHHF2f2dbJix4XzpUF0RS3Zbj0FGIOCAva5P/d/GBOYaACQ1w+0azUkg==", - "dev": true - }, - "uri-js": { - "version": "4.2.2", - "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.2.2.tgz", - "integrity": "sha512-KY9Frmirql91X2Qgjry0Wd4Y+YTdrdZheS8TFwvkbLWf/G5KNJDCh6pKL5OZctEW4+0Baa5idK2ZQuELRwPznQ==", - "dev": true, - "requires": { - "punycode": "^2.1.0" - } - }, - "util-deprecate": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz", - "integrity": "sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8=", - "dev": true - }, - "uuid": { - "version": "3.3.2", - "resolved": "https://registry.npmjs.org/uuid/-/uuid-3.3.2.tgz", - "integrity": "sha512-yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA==", - "dev": true - }, - "validate-npm-package-license": { - "version": "3.0.4", - "resolved": "https://registry.npmjs.org/validate-npm-package-license/-/validate-npm-package-license-3.0.4.tgz", - "integrity": "sha512-DpKm2Ui/xN7/HQKCtpZxoRWBhZ9Z0kqtygG8XCgNQ8ZlDnxuQmWhj566j8fN4Cu3/JmbhsDo7fcAJq4s9h27Ew==", - "dev": true, - "requires": { - "spdx-correct": "^3.0.0", - "spdx-expression-parse": "^3.0.0" - } - }, - "verror": { - "version": "1.10.0", - "resolved": "https://registry.npmjs.org/verror/-/verror-1.10.0.tgz", - "integrity": "sha1-OhBcoXBTr1XW4nDB+CiGguGNpAA=", - "dev": true, - "requires": { - "assert-plus": "^1.0.0", - "core-util-is": "1.0.2", - "extsprintf": "^1.2.0" - } - }, - "xtend": { - "version": "2.1.2", - "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.1.2.tgz", - "integrity": "sha1-bv7MKk2tjmlixJAbM3znuoe10os=", - "dev": true, - "requires": { - "object-keys": "~0.4.0" - } - }, - "yauzl": { - "version": "2.4.1", - "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.4.1.tgz", - "integrity": "sha1-lSj0QtqxsihOWLQ3m7GU4i4MQAU=", - "dev": true, - "requires": { - "fd-slicer": "~1.0.1" - } - } - } -} diff --git a/electron/package.json b/electron/package.json deleted file mode 100644 index b66f08d4..00000000 --- a/electron/package.json +++ /dev/null @@ -1,14 +0,0 @@ -{ - "name": "desktop_mgsc", - "version": "0.0.1", - "description": "Rudimentary Electron implementation of MetagenomeScope's viewer interface", - "main": "main.js", - "scripts": { - "start": "electron ." - }, - "author": "Marcus Fedarko", - "license": "GPL-3.0", - "devDependencies": { - "electron": "^4.0.3" - } -} diff --git a/minify_files.fish b/minify_files.sh similarity index 58% rename from minify_files.fish rename to minify_files.sh index f0907272..ab703bce 100755 --- a/minify_files.fish +++ b/minify_files.sh @@ -1,4 +1,4 @@ -#! /usr/bin/env fish +#! /usr/bin/env bash # Minifies the custom JavaScript and CSS code in MetagenomeScope. # # PREREQUISITES: @@ -17,7 +17,14 @@ # the doctype and attribution, and then remove the now-redundant copy of the # doctype in the minified HTML.) -set -l attribution '/* Copyright (C) 2017-2018 Marcus Fedarko, Jay Ghurye, Todd Treangen, Mihai Pop +# Allow aliases set in this script to be used later on in this script. +# Solution from https://stackoverflow.com/a/3354931. +shopt -s expand_aliases + +# Use of heredoc + read to assign multiline strings to a variable based on +# https://stackoverflow.com/a/23930212/10730311. +read -r -d '' attribution << ATTRIBUTION_END +/* Copyright (C) 2017-2019 Marcus Fedarko, Jay Ghurye, Todd Treangen, Mihai Pop * Authored by Marcus Fedarko * * This file is part of MetagenomeScope. @@ -34,10 +41,13 @@ set -l attribution '/* Copyright (C) 2017-2018 Marcus Fedarko, Jay Ghurye, Todd * * You should have received a copy of the GNU General Public License * along with MetagenomeScope. If not, see . - */' -set -l hattribution ' + */ +ATTRIBUTION_END + +read -r -d '' htmlattribution << ATTRIBUTION_END + ' -echo $attribution > viewer/js/xdot2cy.min.js -echo $attribution > viewer/css/viewer_style.min.css -echo $hattribution > viewer/index.min.html +--> +ATTRIBUTION_END + +# Write attributions to minified files. +echo "$attribution" > viewer/js/xdot2cy.min.js +echo "$attribution" > viewer/css/viewer_style.min.css +echo "$htmlattribution" > viewer/index.min.html +# Actually minify the files, and append them after the attributions. csso viewer/css/viewer_style.css >> viewer/css/viewer_style.min.css uglifyjs viewer/js/xdot2cy.js >> viewer/js/xdot2cy.min.js html-minifier --html5 --minify-css --minify-js --remove-comments --collapse-whitespace viewer/index.html | tail -c +16 >> viewer/index.min.html @@ -70,24 +84,19 @@ html-minifier --html5 --minify-css --minify-js --remove-comments --collapse-whit # # A way to circumvent this problem is using the GNU sed version on macOS, aka # "gsed" (which is available through Homebrew as gnu-sed, as of writing this). -# So we detect if gsed exists on this computer and, if so, alias sed to just -# use gsed instead. -# CODELINK: Idea to alias sed to gsed c/o Sruthi Poddutur's answer to this +# CODELINK: Idea to use gsed if available c/o Sruthi Poddutur's answer to this # Stack Overflow question: https://stackoverflow.com/questions/4247068/ # Link to Sruthi's SO profile: # https://stackoverflow.com/users/7362778/sruthi-poddutur # -# It doesn't seem like fish aliases persist outside of scripts (with the -# exception of those in config.fish), so this shouldn't mess with the user's -# environment after they run the minification script. -# # Note that we redirect which's output to /dev/null so that it doesn't print -# the location of gsed (if it has one) to stdout. (I'm hoping that I don't come -# back to this function a few months from now and go "wait why does this code -# check if 'which gsed' is greater than /dev/null"...) +# the location of gsed (if it has one) to stdout. if which gsed > /dev/null - alias sed="gsed" -end +then + alias mgsc_sed="gsed" +else + alias mgsc_sed="sed" +fi # Add references to minified xdot2cy.js and viewer_style.css files in the # minified HTML file. @@ -96,40 +105,8 @@ end # doesn't create backup files. # CODELINK: See http://www.grymoire.com/Unix/Sed.html#uh-62h (c/o Bruce # Barnett) for more info on -i and which platforms require this argument. -sed -i'' 's/xdot2cy\.js/xdot2cy\.min\.js/g' viewer/index.min.html -sed -i'' 's/viewer_style\.css/viewer_style\.min\.css/g' viewer/index.min.html - -# Set up the Electron version of the index. -# -# Step 1 is to replace the script tag that loads jQuery with a script that -# loads jQuery via require(). -# -# CODELINK: jQuery loading solution for Electron using require() c/o Jocelyn -# Badgely (GitHub username "Twipped")'s answer here: -# https://github.com/electron/electron/issues/254 -set -l jqueryrequire ' - - diff --git a/viewer/index.html b/viewer/index.html index 536e9fab..8fbce17a 100644 --- a/viewer/index.html +++ b/viewer/index.html @@ -36,33 +36,12 @@ - - - diff --git a/viewer/index.min.html b/viewer/index.min.html index 6f8ad1de..f4897b82 100644 --- a/viewer/index.min.html +++ b/viewer/index.min.html @@ -1,6 +1,6 @@ -MetagenomeScope Viewer

File Selection and Setup

 

Standard Mode


SPQR Decomposition Mode


Selected Elements

Nodes 0
Selected Node Information
IDLabelLengthDepthGC ContentIs Repeat?
Edges 0
Selected Edge Information
Src IDTgt IDMultiplicityOrientMeanStd. Dev
Clusters 0
Selected Cluster Information
Cluster TypeNode Count

Search for Nodes


Display Options


Node Colorization


View Scaffolds


Assembly Finishing


Export Graph View


Test Layouts

See here for a list of predefined layouts.

\ No newline at end of file +MetagenomeScope Viewer

File Selection and Setup

 

Standard Mode


SPQR Decomposition Mode


Selected Elements

Nodes 0
Selected Node Information
IDLabelLengthDepthGC ContentIs Repeat?
Edges 0
Selected Edge Information
Src IDTgt IDMultiplicityOrientMeanStd. Dev
Clusters 0
Selected Cluster Information
Cluster TypeNode Count

Search for Nodes


Display Options


Node Colorization


View Scaffolds


Assembly Finishing


Export Graph View


Test Layouts

See here for a list of predefined layouts.

\ No newline at end of file diff --git a/viewer/js/xdot2cy.min.js b/viewer/js/xdot2cy.min.js index 4a9ebc1c..c6428d64 100644 --- a/viewer/js/xdot2cy.min.js +++ b/viewer/js/xdot2cy.min.js @@ -1,4 +1,4 @@ -/* Copyright (C) 2017-2018 Marcus Fedarko, Jay Ghurye, Todd Treangen, Mihai Pop +/* Copyright (C) 2017-2019 Marcus Fedarko, Jay Ghurye, Todd Treangen, Mihai Pop * Authored by Marcus Fedarko * * This file is part of MetagenomeScope.