diff --git a/package.json b/package.json index 35254c7d64..2b57859b7c 100644 --- a/package.json +++ b/package.json @@ -1,7 +1,7 @@ { "name": "@gmod/jbrowse", "main": "browser/main.js", - "version": "1.15.3-alpha.0", + "version": "1.15.3", "description": "JBrowse - client-side genome browser", "repository": "https://github.com/GMOD/jbrowse.git", "scripts": { diff --git a/release-notes.md b/release-notes.md index 95565c485e..7eb33c65a9 100644 --- a/release-notes.md +++ b/release-notes.md @@ -1,4 +1,4 @@ -{{$NEXT}} +# Release 1.15.3 2018-08-29 21:49:13 UTC ## Minor improvements diff --git a/src/JBrowse/package.json b/src/JBrowse/package.json index 6c256cbac8..d56e2e1a19 100644 --- a/src/JBrowse/package.json +++ b/src/JBrowse/package.json @@ -1,6 +1,6 @@ { "name": "JBrowse", - "version": "1.15.3-alpha.0", + "version": "1.15.3", "copyright":"© 2007-2017 The Evolutionary Software Foundation", "main": "main", "dependencies": { diff --git a/website/blog/2018-08-29-jbrowse-1-15-3.md b/website/blog/2018-08-29-jbrowse-1-15-3.md new file mode 100644 index 0000000000..a1612e4773 --- /dev/null +++ b/website/blog/2018-08-29-jbrowse-1-15-3.md @@ -0,0 +1,55 @@ +--- +layout: post +title: JBrowse 1.15.3 maintenance release +date: 2018-08-29 +tags: ["News","Software releases"] +--- + +JBrowse 1.15.3 has been released! This contains an bugfix introduced in 1.15.0 where typing a reference sequence name in the search bar did not navigate to it properly. +It also contains a cool feature where "ultra minimal configs" can be specified by simply specifying a track label and urlTemplate + +For example, a directory containing indexed files like VCF, BAM, GFF3 tabix, and indexed FASTA can have a config simply like this in tracks.conf + +``` +[GENERAL] +refSeqs=volvox.fa.fai +[tracks.refseq] +urlTemplate=volvox.fa +[tracks.bam] +urlTemplate=volvox-sorted.bam +[tracks.cram] +urlTemplate=volvox-sorted.cram +[tracks.vcf] +urlTemplate=volvox.filtered.vcf.gz +[tracks.gff] +urlTemplate=volvox.sort.gff3.gz +[tracks.bed] +urlTemplate=volvox.sort.bed.gz +``` + +Enjoy browsing! + +* [JBrowse-1.15.3.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3.zip) - minified release +* [JBrowse-1.15.3-dev.zip](https://github.com/GMOD/jbrowse/archive/1.15.3-release.zip) - use this if you modify jbrowse source code or use plugins +* [JBrowse-1.15.3-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-win32-x64.zip) +* [JBrowse-1.15.3-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-linux-x64.zip) +* [JBrowse-1.15.3-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.15.3-release/JBrowse-1.15.3-desktop-darwin-x64.zip) + + + + +## Minor improvements + + * Add ability to automatically deduce the storeClass and trackType of files based on + the file extension of urlTemplate. This allows very minimal configs where only + track label and urlTemplate can be specified. (issue #1189, @cmdcolin) + +## Bug fixes + + * Fixed an issue with servers that use HTTP Basic Authentication on certain browsers, + notably some Chromium, Firefox 60 and earlier, and Safari. Thanks to Keiran Raine + for reporting and @cmdcolin for debugging. (issue #1186, @rbuels) + + * Fix issue where searching for reference sequence names would not be navigate to the + typed in reference sequence (issue #1193, @cmdcolin) + diff --git a/website/siteConfig.js b/website/siteConfig.js index 230f41b16a..6dbd138106 100644 --- a/website/siteConfig.js +++ b/website/siteConfig.js @@ -27,7 +27,7 @@ const createVariableInjectionPlugin = variables => { }; const v = { - "version": "1.15.2" + "version": "1.15.3" }; const siteVariables = { "version": v.version,