SVclone v1.1.4

• Removed empty quotechar arg in csv writer
• Fix handling of blacklist bed file
• Documentation fix

SVclone v1.1.3

• Version flag now gets correct package version
• Sample more reads when checking for consistent
  reads sizes
• Check for overlap between SV chroms and CNVs
  intended to make errors clearer

SVclone v1.1.2

Fixes issue 26.

SVclone v1.1.1

Fixes issue 25.

SVclone v1.1.0

• installation now more portable (can now invoke using 'svclone' on the commandline)
• removed scipy as a requirement
• support for TITAN SCNAs (currently experimental)

SVclone v1.0.2

• Added filter to remove SNVs at duplicate locations
• Updated deprecated bool type

SVclone v1.0.1

• Support for single SV clustering
• Bug fixes

SVclone Python 3 port

Port of SVclone to Python 3 using the ccube clustering model.

SVclone ccube model

Stable release for Python 2.7* utilising the ccube clustering model.

archived PyMC2 version

Archived PyMC2 version described in the bioRxiv preprint. SVclone now uses the ccube clustering model, and is the recommended version to run.