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@ENCODE-DCC

ENCODE DCC

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  1. encoded encoded Public

    Metadata database for ENCODE project

    JavaScript 110 51

  2. snovault snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 8

  3. checkfiles checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2

  4. pyencoded-tools pyencoded-tools Public

    Jupyter Notebook 10 13

  5. WranglerScripts WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 5 4

Repositories

Showing 10 of 123 repositories
  • checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    ENCODE-DCC/checkfiles’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Sep 16, 2024
  • encoded Public

    Metadata database for ENCODE project

    ENCODE-DCC/encoded’s past year of commit activity
    JavaScript 110 MIT 51 4 56 Updated Sep 14, 2024
  • kentUtils Public

    UCSC command line bioinformatic utilities

    ENCODE-DCC/kentUtils’s past year of commit activity
    C 166 95 15 1 Updated Jul 31, 2024
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    ENCODE-DCC/genomic-data-service’s past year of commit activity
    Python 4 MIT 2 1 0 Updated Jul 23, 2024
  • atac-seq-pipeline Public

    ENCODE ATAC-seq pipeline

    ENCODE-DCC/atac-seq-pipeline’s past year of commit activity
    Python 382 MIT 171 87 2 Updated Jul 18, 2024
  • geo-submission Public
    ENCODE-DCC/geo-submission’s past year of commit activity
    Python 3 MIT 2 0 1 Updated May 16, 2024
  • snovault Public

    The SnoVault general purpose hybrid object-relational database

    ENCODE-DCC/snovault’s past year of commit activity
    Python 16 MIT 8 2 28 Updated Mar 7, 2024
  • chip-seq-pipeline2 Public

    ENCODE ChIP-seq pipeline

    ENCODE-DCC/chip-seq-pipeline2’s past year of commit activity
    Python 240 MIT 123 49 0 Updated Feb 15, 2024
  • hic-pipeline Public

    HiC uniform processing pipeline

    ENCODE-DCC/hic-pipeline’s past year of commit activity
    WDL 56 MIT 23 5 2 Updated Nov 8, 2023
  • coalesce_s3_log_glue_spark Public

    Glue pyspark job to combine s3 access logs to parquet

    ENCODE-DCC/coalesce_s3_log_glue_spark’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 19, 2023
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