Nearest Neighbor distance from each cell in the image to the closest Treg was calculated using Euclidean distance.
Robust scaling (1st – 99th percentile) was performed on each marker from each image.
R Markdown of Single cell RNAseq and scCiteSeq data preprocessing
R Markdown of single cell integration of scRNAseq, scCiteSeq, scTCR seq and its downstream analysis
R Markdown of TCR seq figure 3.
Contains modified code of ShinyCell for Treg Lymphoma Shinyapp