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ROADMAP.txt
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ROADMAP.txt
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= ROADMAP =
A lot has been achieved with Biolib. Much of the Perl/Ruby/Python
mapping is automatic and over 5000 scientific functions have been
mapped from R, Staden, Affyio, R/qtl and EMBOSS C libraries.
Still some stuff is missing, this is the ROADMAP:
== MODULES ==
* Affymetrix microarrays using BioConductor modules
[+] RMA and quantile normalization using Affy module (RMA branch)
[ ] add debug and error messages through Rlib
* Libsequence module
[ ] finalize
* Bio++ module
[ ] finalize
* GSL (GNU Scientific library)
[x] Map modules
(see ASciLib project http://biolib.open-bio.org/wiki/ASciLib)
* EMBOSS
[x] Proof-of-concept mapping to Perl/Python/Ruby
(see http://biolib.open-bio.org/wiki/Mapping_EMBOSS)
[ ] Full mapping
* R/QTL
[ ] Map module - requires preprocessing of QTL files
[ ] Scanone module
[ ] Add MQM module
* NCBI Tools
[ ] Proof-of-concept mapping
== GENERAL ==
* Build system
[ ] Provide recent builds (also on github? mod wiki)
[x] Add Python support (staden branch)
[ ] Add JAVA support
[ ] Add R support
[ ] Create BioPerl CORE/CPAN modules (Chris)
[ ] Automated documentation through SWIG