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@YeoLab

Yeo lab at UCSD

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  1. flotilla flotilla Public

    Reproducible machine learning analysis of gene expression and alternative splicing data

    Jupyter Notebook 121 26

  2. single-cell-bioinformatics single-cell-bioinformatics Public archive

    Course material in notebook format for learning about single cell bioinformatics methods

    Jupyter Notebook 99 38

  3. clipper clipper Public

    A tool to identify CLIP-seq peaks

    Python 64 41

  4. outrigger outrigger Public

    Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

    Python 61 22

  5. sailor sailor Public

    CWL+Singularity implementation of an RNA editing workflow

    Jupyter Notebook 39 11

  6. eCLIP eCLIP Public

    Common Workflow Language 37 26

Repositories

Showing 10 of 64 repositories
  • HydRA Public Forked from Wenhao-Jin/HydRA
    YeoLab/HydRA’s past year of commit activity
    Python 9 2 0 0 Updated Sep 13, 2024
  • containers Public

    Collection of Dockerfiles

    YeoLab/containers’s past year of commit activity
    Dockerfile 0 1 2 0 Updated Sep 10, 2024
  • skipper Public

    Skip the peaks and expose RNA-binding in CLIP data

    YeoLab/skipper’s past year of commit activity
    R 7 3 4 2 Updated Aug 27, 2024
  • YeoLab/Mudskipper’s past year of commit activity
    Python 0 0 0 0 Updated May 14, 2024
  • FLARE Public

    RNA edit detection (SAILOR) and peak calling (FLARE)

    YeoLab/FLARE’s past year of commit activity
    Python 6 3 3 2 Updated Mar 27, 2024
  • YeoLab/LR-Ribo-STAMP’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 21, 2024
  • eclip-qc Public
    YeoLab/eclip-qc’s past year of commit activity
    Python 0 0 5 0 Updated Jan 8, 2024
  • CWL Public

    CWL Documents for commandlinetools and workflows

    YeoLab/CWL’s past year of commit activity
    0 0 0 0 Updated Sep 27, 2023
  • qtools Public

    qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python

    YeoLab/qtools’s past year of commit activity
    Python 21 3 2 1 Updated Sep 20, 2023
  • oligoCLIP Public Forked from algaebrown/oligoCLIP

    pipeline for oligoCLIP

    YeoLab/oligoCLIP’s past year of commit activity
    Python 2 1 0 0 Updated Sep 8, 2023

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