In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Python library for calling Cytoscape Automation via CyREST

Angular 13+ Cytoscape.js Wrapper

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

Co-expression networks for gene correlation analysis.

A course on Network Science, including network formation models, structural patterns, and dynamic processes.

Web client for RDFShape API with human-friendly validations and visualizations.

Visually explore relationships between actors (who played with who?) using IMDB non-commercial dataset

Render graphs on the server side with Cytoscape.js, getting image file as output (using jsdom)

Lojban parser with some slick visual representation

CloudMapper helps you analyze your Amazon Web Services (AWS) environments.

A Cytoscape Jupyter widget

ScyNet: Visualisation of community metabolic models in Cytoscape

Cytoscape 中文用户手册 | Cytoscape User Manual (Chinese Version)

Python script that visualizes international commodity trade networks quickly and beautifully

The CyEnGNet-App is a plugin for Cytoscape. It implements the EnGNet algorithm, a powerful network analysis method. This app allows users to directly generate the output network in Cytoscape.

Cytoscape.js Bubblesets plugin