Data intensive science for everyone.
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Updated
Jun 1, 2024 - Python
Data intensive science for everyone.
Official git repository for Biopython (originally converted from CVS)
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Program takes in a string of DNA, and converts it to a protein chain.
Get standard bioinformatics stats, and more, for your DNA or RNA sequence.
UGENE is free open-source cross-platform bioinformatics software
Official code repository for GATK versions 4 and up
tools for working with genome variation graphs
QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing and molecular programming systems.
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Tool for fully-automated inference of species trees from raw genome assemblies
♥ Essential Functions for DNA Manipulation
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
CoRA Docs
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
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