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Feb 17, 2023 - Python
entrez
Here are 21 public repositories matching this topic...
Repository for supplementary materials for study on detection of Brno loanvirus in Southern Russia
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May 20, 2024 - Jupyter Notebook
This is a Kaggle competition sponsored by Memorial Sloan Kettering Cancer Center. This competition is the first step in personalized medicine to determine oncogenicity of a tumor. Algorithm using sparse words to predict gene mutations effect on protein function.
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Nov 17, 2022 - Jupyter Notebook
Python scripts for searching Pubmed using Biopython and working with eponymous terms
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Mar 9, 2021 - Python
Modification of the Biopython Entrez module to be compatible with AWS Lambda.
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Feb 14, 2018 - Python
Sequencing data preprocessing
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Jun 18, 2018 - R
Extract figures and figure captions from PMC open access papers
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Apr 3, 2024 - Jupyter Notebook
Fetch taxonomic information from Entrez using a list of TaxIDs and visualize user-selected taxonomic ranks with SankeyMATIC.
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May 2, 2024 - Python
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May 1, 2020 - Jupyter Notebook
Este é um repositório de um pipeline de dados, uma ferramenta automatizada e robusta projetada para efetuar a estração de sequências genéticas utilizando a API Entrez do GenBank. Este pipeline é o resultado de um esforço contínuo para facilitar o acesso e a manipulação de dados genéticos de importância global, com foco atual no vírus Chikungunya.
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May 29, 2024 - Python
This script iterates over an excel file with Genbank accession numbers. It creates individual fasta files with customized deflines for every valid accession number. It also creates a combined fasta file and .txt file with every valid accession number.
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Dec 9, 2022 - Jupyter Notebook
Materials used for introductory classes using Julia for statistics, biomedical queries and plotting
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Nov 16, 2017 - Jupyter Notebook
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
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Nov 2, 2023 - Python
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