8.8 compatibility issue with JavaVersion, daemon registry and older TAPI clients

[big-guy]

Current Behavior

This was reported as a flaky test failure:
https://ge.gradle.org/s/bgojhf2n4dz7a/tests/task/:kotlin-dsl-tooling-builders:gradle6.9.4CrossVersionTest/details/org.gradle.kotlin.dsl.tooling.builders.r54.KotlinBuildScriptModelCrossVersionSpec/can%20fetch%20buildSrc%20classpath%20in%20face%20of%20buildscript%20exceptions%20TAPI%206.9.4%20-%3E%20Gradle%20current?top-execution=1

Expected Behavior

This test should not be flaky due to 8.8 changes related to daemon registry.

Context (optional)

No response

Steps to Reproduce

This needs to be reproduced

Gradle version

8.9 nightly

Gradle version that used to work

N/A

Build scan URL (optional)

No response

Your Environment (optional)

No response

[ljacomet]

Fixed through #29266