Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
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Updated
Jun 9, 2024 - Rust
Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia
Package for processing and analyzing glycans and their role in biology.
An FPGA design for simulating biological neurons
Website for Mangul Lab.
A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
Sitio web del Grupo de Biología Computacional
UCSC Genome Browser source tree. Stable branch: "beta".
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Infectious Disease Sequencing Platform
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Analysis of single-cell RNA-seq data from patients with immunotherapy-related myocarditis.
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
miRPV is an automated tool that enables users to predict and validate microRNAs from genome/gene sequences. miRPV Features: Predict novel pre-miRNA from any given sequence Predict secondary structure stability Predict authentic pre-miRNA Predict novel mature miRNA Predict novel miRNA targets
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing.
Clustering scRNAseq by genotypes
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