Issues with simulations on Frontera #1019
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vikaskurapati
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"I did not use the spack workflow as there were quite some errors" |
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Hi,
I am trying to run SeisSol on Frontera and I am facing some issues. I am using the batch script from https://seissol.readthedocs.io/en/latest/frontera.html. I did not use the spack workflow as there were quite some errors which I could not resolve which it returned.
I installed all the dependencies manually except eigen which is loaded from the modules available. I receive the following errors:
Rank: 0 | Warning | Ignoring space order from parameter file, using 3
[c204-001:195651:0:195651] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x7fff1442aff8)
[c204-001:195650:0:195650] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x7fff61eb2ff8)
==== backtrace (tid: 195651) ====
0 0x000000000007d067 __GI__IO_default_xsputn() :0
1 0x0000000000048707 _IO_vfprintf_internal() :0
2 0x0000000000077e73 _IO_vasprintf() :0
3 0x0000000000c24b4d H5E_printf_stack() ???:0
4 0x0000000000c16a12 H5P_get() ???:0
and similar errors and then
[mpiexec@c204-001.frontera.tacc.utexas.edu] HYD_sock_write (../../../../../src/pm/i_hydra/libhydra/sock/hydra_sock_intel.c:360): write error (Bad file descriptor)
[mpiexec@c204-001.frontera.tacc.utexas.edu] HYD_sock_write (../../../../../src/pm/i_hydra/libhydra/sock/hydra_sock_intel.c:360): write error (Bad file descriptor)
[mpiexec@c204-001.frontera.tacc.utexas.edu] HYD_sock_write (../../../../../src/pm/i_hydra/libhydra/sock/hydra_sock_intel.c:360): write error (Bad file descriptor)
[mpiexec@c204-001.frontera.tacc.utexas.edu] HYD_sock_write (../../../../../src/pm/i_hydra/libhydra/sock/hydra_sock_intel.c:360): write error (Bad file descriptor)
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 0 PID 195650 RUNNING AT c204-001
= KILLED BY SIGNAL: 11 (Segmentation fault)
I am unable to understand what the exact error is and how it could be fixed. I reinstalled hdf5 with mpiicc, mpiicpc as it seems that the error lies somewhere related to it.
Thanks in advance!
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