Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Simulation hangs with fine mesh and the refinement output #612

Open
Nicolucas opened this issue Jul 12, 2022 · 1 comment
Open

Simulation hangs with fine mesh and the refinement output #612

Nicolucas opened this issue Jul 12, 2022 · 1 comment
Labels

Comments

@Nicolucas
Copy link

Describe the bug
Likely a known bug?
Simulation hangs after 0.5s of simulation time after increasing the refinement of the mesh. After changing the parameter file variable SurfaceOutputRefinement from 1 to 0, I can run the model successfully for the expected 40s of simulation time.

Expected behavior
Results of the simulation with the given settings, and the new refined mesh, beyond 0.5s simulation time.

To Reproduce
Steps to reproduce the behavior:

  1. Which version do you use? Provide branch and commit id.
    branch: origin/fix-plasticity, commit f8e01a5

  2. Which build settings do you use? Which compiler version do you use?

ADDRESS_SANITIZER_DEBUG:BOOL=OFF
ASAGI:BOOL=ON
CMAKE_ADDR2LINE:FILEPATH=/usr/bin/addr2line
CMAKE_BUILD_TYPE:STRING=Release
CMAKE_INSTALL_PREFIX:PATH=/hppfs/work/pr63qo/ru42row3/SeisSol2022/SeisSol/build-release/build-release
COMMTHREAD:BOOL=ON
COVERAGE:BOOL=OFF
DYNAMIC_RUPTURE_METHOD:STRING=quadrature
EQUATIONS:STRING=elastic
GEMM_TOOLS_LIST:STRING=LIBXSMM,PSpaMM
HDF5:BOOL=ON
HDF5_hdf5_LIBRARY_RELEASE:FILEPATH=/dss/dsshome1/lrz/sys/spack/release/22.2.1/opt/skylake_avx512/netcdf-hdf5-all/4.7_hdf5-1.10-intel-ymxvq7k/lib/libhdf5.so
HDF5_hdf5_hl_LIBRARY_RELEASE:FILEPATH=/dss/dsshome1/lrz/sys/spack/release/22.2.1/opt/skylake_avx512/netcdf-hdf5-all/4.7_hdf5-1.10-intel-ymxvq7k/lib/libhdf5_hl.so
HOST_ARCH:STRING=skx
INTEGRATE_QUANTITIES:BOOL=OFF
LIKWID:BOOL=OFF
LOG_LEVEL:STRING=warning
LOG_LEVEL_MASTER:STRING=info
Libxsmm_executable_PROGRAM:FILEPATH=/hppfs/work/pr63qo/di73yeq4/myLibs/SeisSol_dependencies_intel/bin/libxsmm_gemm_generator
MEMKIND:BOOL=OFF
MEMORY_LAYOUT:FILEPATH=auto
METIS:BOOL=ON
MINI_SEISSOL:BOOL=ON
MPI:BOOL=ON
NETCDF:BOOL=ON
NUMA_AWARE_PINNING:BOOL=ON
NUMA_ROOT_DIR:PATH=/dss/dsshome1/lrz/sys/spack/release/22.2.1/opt/skylake_avx512/numactl/2.0.14-intel-vbsz45d
NUMBER_OF_FUSED_SIMULATIONS:STRING=1
NUMBER_OF_MECHANISMS:STRING=0
OPENMP:BOOL=ON
ORDER:STRING=4
PLASTICITY_METHOD:STRING=nb
PRECISION:STRING=double
PROXY_PYBINDING:BOOL=OFF
PSpaMM_PROGRAM:FILEPATH=/hppfs/work/pr63qo/di73yeq4/myLibs/SeisSol_dependencies_intel/bin/pspamm.py
SIONLIB:BOOL=OFF
TESTING:BOOL=OFF
TESTING_GENERATED:BOOL=OFF
USE_IMPALA_JIT_LLVM:BOOL=OFF
easi_DIR:PATH=/hppfs/work/pr63qo/di73yeq4/myLibs/SeisSol_dependencies_intel/lib64/cmake/easi

  1. On which machine does your problem occur? If on a cluster: Which modules are loaded?
  1. admin/1.0 13) numactl/2.0.14-intel21
  2. tempdir/1.0 14) yaml-cpp/0.7.0-intel21
  3. lrz/1.0
  4. spack/22.2.1
  5. intel-oneapi-compilers/2021.4.0
  6. intel-mkl/2020
  7. intel-mpi/2019-intel
  8. gcc/11.2.0
  9. cmake/3.21.4
  10. python/3.8.11-extended
  11. libszip/2.1.1
  12. netcdf-hdf5-all/4.7_hdf5-1.10-intel21-impi
  1. Provide parameter/material files.
    /hppfs/work/pr63qo/ru42row3/SeisSol2022/2021Qinghai
    The parameter file variable SurfaceOutputRefinement would need to be changed back from 0 to 1 to reproduce the issue

Thanks for the help with it!

Screenshots/Console output
If you suspect a problem in the numerics/physics add a screenshot of your output.

If you encounter any errors/warnings/... during execution please provide the console output.

Additional context
Add any other context about the problem here.

@Nicolucas Nicolucas added the bug label Jul 12, 2022
@Thomas-Ulrich
Copy link
Contributor

I can't reproduce your issue with the latest master, build with seissol-env.
(https://seissol.readthedocs.io/en/latest/supermuc.html)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants