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spec_yes_plus_fixed_env_no.out.cmp
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spec_yes_plus_fixed_env_no.out.cmp
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AtChem2 v1.2.1
-------------
Directories
-------------
Model directory is: model
Output directory is: travis/tests/spec_yes_plus_fixed_env_no/output
Reaction Rates directory is: travis/tests/spec_yes_plus_fixed_env_no/output/reactionRates
Configuration directory is: travis/tests/spec_yes_plus_fixed_env_no/model/configuration
Constraints directory is: travis/tests/spec_yes_plus_fixed_env_no/model/constraints
Environment Constraints directory is: travis/tests/spec_yes_plus_fixed_env_no/model/constraints/environment
Photolysis Constraints directory is: travis/tests/spec_yes_plus_fixed_env_no/model/constraints/photolysis
Species Constraints directory is: travis/tests/spec_yes_plus_fixed_env_no/model/constraints/species
MCM directory is: mcm
Shared library is: travis/tests/spec_yes_plus_fixed_env_no/model/configuration/mechanism.so
-----------------------
Species and reactions
-----------------------
Number of Species = 29
Number of Reactions = 71
Size of lhs = 114
Size of rhs = 100
Reading reactants (lhs) from mechanism.reac...
Reading products (rhs) from mechanism.prod...
Finished reading lhs and rhs data.
Reading species names from mechanism.species...
Finished reading species names.
Reading initial concentrations...
1 CH4 4.750E+13
2 NO2 2.640E+11
3 O3 1.320E+12
Finished reading initial concentrations.
----------------------------------------
Species requiring detailed rate output
----------------------------------------
Reading which species require detailed rate output...
1 OH
2 HO2
Finished reading which species require detailed rate output.
Species requiring detailed rate output (number of species found): 2
Reading ro2 numbers from mechanism.ro2...
Finished reading ro2 numbers.
Reading solver parameters from file...
------------------
Solver parameters:
------------------
atol: 1.000E-04
rtol: 1.000E-06
deltaMain: 1.000E-04
lookBack: 100
maxStep: 1.000E+02
preconBandUpper: 750
preconBandLower: 750
solverType: SPGMR + Banded Preconditioner
------------------
Finished reading solver parameters from file.
Reading model parameters from file...
-----------------
Model parameters:
-----------------
number of steps: 3
step size: 0.300E+03
species interpolation method: piecewise linear
conditions interpolation method: piecewise linear
rates output step size, ROPA/RODA: 3600
model start time: 0
jacobian output step size: 0
latitude: 0.530E+02
longitude: -0.100E+01
reaction rates output step size: 300
day/month/year: 1/ 7/2007
-----------------
Finished reading model parameters from file.
---------------------
Species of Interest
---------------------
Reading concentration output from file...
Finished reading concentration output from file.
Output required for concentration of 3 species:
1 CH4
2 NO2
3 O3
------------
Photolysis
------------
Reading photolysis numbers from file...
1
...
61
Finished reading photolysis numbers.
Number of photolysis numbers: 35
Looking for photolysis constants file...
No photolysis constants file found.
No photolysis constants applied, so trying constrained photolysis rates file...
Looking for photolysis constraints file...
Checking that photolysis constraints exist in file...
Photolysis constraint file is empty, so all photolysis rates will be calculated.
Reading all photolysis rates from file...
1 6.073E-05 1.743E+00 4.740E-01 J1 1.000E+00
...
61 7.537E-04 4.990E-01 2.660E-01 J61 1.000E+00
Finished reading all photolysis rates.
Number of all photolysis rates: 35
-----------------------
Environment variables
-----------------------
Reading environment variables...
Number of environment variables: 11
1 TEMP 293
2 PRESS 1013
3 RH NOTUSED
5 H2O 2.538e+17
5 DEC 0.414
6 BLHEIGHT NOTUSED
7 DILUTE NOTUSED
8 JFAC NOTUSED
9 ROOF OPEN
10 ASA NOTUSED
Finished reading environment variables.
Checking for constrained environment variables...
Finished checking for constrained environment variables.
-------------
Constraints
-------------
Counting the variable-concentration species to be constrained (in file speciesConstrained.config)...
Finished counting the names of variable-concentration constrained species.
Number of names of variable-concentration constrained species: 2
Counting the fixed-concentration species to be constrained (in file speciesConstant.config)...
Finished counting the names of fixed-concentration constrained species.
Number of names of fixed-concentration constrained species: 2
Setting size of constraint arrays, n = 4
Reading in the names of variable-concentration constrained species...
Finished reading the names of variable-concentration constrained species
1 CH4
2 O3
maximum number of species constraint data points: 9
Reading concentration data for variable-concentration constrained species...
CH4 ...
O3 ...
Reading in the names and concentration of the fixed constrained species (in file speciesConstant.config)...
1 HNO3 4.730E+13
2 SO2 5.120E+10
Finished reading in the names and concentration of fixed-concentration species.
Finished reading constrained species.
Initialising concentrations of constrained species...
Finished initialising concentrations of constrained species.
---------------
Problem stats
---------------
neq = 25
numberOfConstrainedSpecies = 4
t0 = 0.000E+00
setting maxnumsteps ier = 0
setting maxstep ier = 0
-----------
Model run
-----------
time = 300
time = 600
time = 900
------------------
Final statistics
------------------
No. steps = 153 No. f-s = 185 No. J-s = 249 No. LU-s = 43
No. nonlinear iterations = 184
No. nonlinear convergence failures = 0
No. error test failures = 6
Runtime = 0
Deallocating memory.