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Makefile.llvm
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Makefile.llvm
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#!/usr/bin/make
PRINTTARGET=short.pdb
SOURCES=$(wildcard *.hs)
#GHCOPTS=-O1
GHCOPTS=-O3 -msse2 -rtsopts -fllvm
#-rtsopts -prof -auto-all
#GHC=ghc-cvs
GHC=ghc-7.4.1
PROFOPTS=-prof -auto-all -caf-all -fhpc -rtsopts=all -osuf .p_o
# -fhpc - coverage data
# Then:
# bash$ hpc report Run --exclude=Main --exclude=QC
PDBDIR=/media/backup/pdb
TAPROF=+RTS -p
HPPROF=+RTS -i0.001 -hc -p -K100M
# To format heap profile into .ps:
# hp2ps -e8in -c %.hp
# -fforce-recomp -- forces recompilation of all modules
test: PrintEvents PDB2Fasta Rg PrintStructureObject PrinterTest StericClashCheck
time ./PrintEvents --errors-only 1CRN.pdb && time ./PrintEvents --errors-only 3JYV.pdb && \
time ./PDB2Fasta 1CRN.pdb && \
time ./Rg 1CRN.pdb && \
time ./PrintStructureObject 1CRN.pdb /dev/null && \
time ./PrinterTest 1CRN.pdb > /dev/null && \
time ./StericClashCheck 1CRN.pdb 1CRN.pdb > /dev/null
time ./Viewer 1CRN.pdb
PDB2Fasta: PDB2Fasta.hs
$(GHC) --make ${GHCOPTS} $@
Rg: Rg.hs
$(GHC) --make ${GHCOPTS} $@
PrintStructureObject: PrintStructureObject.hs
$(GHC) --make ${GHCOPTS} $@
PrinterTest: PrinterTest.hs
$(GHC) --make ${GHCOPTS} $@
StericClashCheck: StericClashCheck.hs
$(GHC) --make ${GHCOPTS} $@
Viewer: Viewer.hs
$(GHC) -package OpenGL --make ${GHCOPTS} $@
%.hi %.o: %.hs
${GHC} $<
errors: PrintEvents
./PrintEvents --errors-only errors/*
Rg.prof: Rg
$(GHC) --make ${GHCOPTS} Rg.hs ${PROFOPTS}
Rg.1CRN.prof: Rg.prof 1CRN.pdb
./Rg 1CRN.pdb ${TAPROF}
mv Rg.prof Rg.1CRN.prof
Rg.3JYV.prof: Rg.prof 3JYV.pdb
./Rg 3JYV.pdb ${TAPROF}
mv Rg.prof Rg.3JYV.prof
Rg.1HTQ.prof: Rg.prof 1HTQ.pdb
./Rg 1HTQ.pdb ${TAPROF}
mv Rg.prof Rg.1HTQ.prof
Rg.profiles: Rg.1CRN.prof Rg.3JYV.prof Rg.1HTQ.prof
PrintEvents.prof:
$(GHC) --make ${GHCOPTS} PrintEvents.hs ${PROFOPTS} #-fforce-recomp
opt:
$(GHC) --make ${GHCOPTS} -O2 PrintEvents.hs #-fforce-recomp
coverage: PrintEvents.short.prof
hpc report PrintEvents
todo: PrintEvents
./PrintEvents --unhandled short.pdb #3JYV.pdb
timings:
@echo "GHC executable and options: ${GHC} ${GHCOPTS}"
bash -c "time ./PrintEvents --errors-only 1CRN.pdb > /dev/null"
bash -c "time ./PrintEvents --errors-only 3JYV.pdb > /dev/null"
bash -c "time ./PrintEvents --errors-only 1HTQ.pdb > /dev/null"
profiles: PrintEvents.prof PrintEvents.1CRN.prof PrintEvents.3JYV.prof PrintEvents.1HTQ.prof
PrintEvents.short.prof: PrintEvents.prof short.pdb
./PrintEvents --errors-only short.pdb ${TAPROF}
mv PrintEvents.prof PrintEvents.short.prof
PrintEvents.1CRN.prof: PrintEvents.prof 1CRN.pdb
./PrintEvents --errors-only 1CRN.pdb ${TAPROF}
mv PrintEvents.prof PrintEvents.1CRN.prof
PrintEvents.3JYV.prof: PrintEvents.prof 3JYV.pdb
./PrintEvents --errors-only 3JYV.pdb ${TAPROF}
mv PrintEvents.prof PrintEvents.3JYV.prof
PrintEvents.1HTQ.prof: PrintEvents.prof 1HTQ.pdb
./PrintEvents --errors-only 1HTQ.pdb ${TAPROF}
mv PrintEvents.prof PrintEvents.1HTQ.prof
modres.txt:
for i in ${PDBDIR}/*/*.ent.gz; do nice -n 20 zgrep '^MODRES' $i; done | uniq --skip-chars=11 --check-chars=4 | sort -k3 -t' ' | uniq --skip-chars=11 --check-chars=4 > modres.txt
print: PrintEvents
-@./PrintEvents --print ${PRINTTARGET} |diff -u -w - ${PRINTTARGET}
all: locs PrintEvents
# count lines of code
locs:
haskell_count *.hs
#Makefile: test
PrintEvents: $(SOURCES)
$(GHC) --make ${GHCOPTS} PrintEvents.hs
tags TAGS: $(SOURCES)
hasktags *.hs
# Or try echo ":ctags" | ghci PrintEvents.hs
Setup.lhs: hPDB.cabal
cabal configure --with-compiler=/usr/bin/ghc --with-hc-pkg=/usr/bin/ghc-pkg
doc: Setup.lhs
cabal hscolour
cabal haddock --hyperlink-source
stat:
haskell_count *.hs
clean:
find . -iname '*.hi' -or -iname '*.o' -or -iname '*.p_hi' -or -iname '*.p_o' -exec rm -f '\{\}' ';'
rm -f PrintEvents Rg # compilation leftovers
rm -f *.js *.css *.html *.gif # HADDOCK leftovers
rm -rf Setup.lhs dist # CABAL leftovers
record_stats.txt:
cut -c-6 1HTQ.pdb|sort|uniq -c|sort --numeric > record_stats.txt
.PHONY: clean test PrintEvents.prof