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sas_two_way_anova_without_grouping.m
130 lines (114 loc) · 4.6 KB
/
sas_two_way_anova_without_grouping.m
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function out = sas_two_way_anova_without_grouping(varargin)
% Parse params
p = inputParser;
addOptional(p,'excel_file_string','');
addOptional(p,'excel_sheet','Sheet1');
addOptional(p,'factor_1','');
addOptional(p,'factor_2','');
addOptional(p,'test_variable','');
addOptional(p,'results_file_string','');
addOptional(p,'results_type','html');
addOptional(p,'treat_f2_numbers_as_strings',1);
addOptional(p,'f2_numbers_as_strings_decimal_places',6);
addOptional(p,'calling_path_string','');
parse(p,varargin{:});
% Test type
test_type = 'two_way_without_grouping';
% Code
% Deduce the calling function to help with paths
% Deduce the calling function to help with paths
if (isempty(p.Results.calling_path_string))
st=dbstack('-completenames');
calling_function=st(2).file;
calling_path_string=fileparts(calling_function);
else
calling_path_string = p.Results.calling_path_string;
end
% Code
out = run_sas_model( ...
'excel_file_string',p.Results.excel_file_string, ...
'excel_sheet',p.Results.excel_sheet, ...
'test_type',test_type, ...
'factor_1',p.Results.factor_1, ...
'factor_2',p.Results.factor_2, ...
'test_variable',p.Results.test_variable, ...
'results_file_string',p.Results.results_file_string, ...
'results_type',p.Results.results_type, ...
'calling_path_string',calling_path_string);
% Scrape html for p values
if (strcmp(p.Results.results_type,'html'))
% First get main effects
tag_string = 'Type III Tests of Fixed Effects';
table_strings = pull_table_strings_from_html( ...
out.results_file_string,tag_string,21);
out.p_table.tests{1}=table_strings{7};
out.p_table.p(1)=convert_p_string_to_number(table_strings{11});
out.p_table.tests{2}=table_strings{12};
out.p_table.p(2)=convert_p_string_to_number(table_strings{16});
out.p_table.tests{3}=table_strings{17};
out.p_table.p(3)=convert_p_string_to_number(table_strings{21});
% Pull post-hoc tests
% First look for factor_1 and factor_2 entries
d = read_structure_from_excel( ...
'filename',p.Results.excel_file_string, ...
'sheet',p.Results.excel_sheet);
f1_strings = unique(d.(p.Results.factor_1))
f2_strings = unique(d.(p.Results.factor_2))
if (p.Results.treat_f2_numbers_as_strings)
if (isnumeric(f2_strings))
for i=1:numel(f2_strings)
switch f2_strings(i)
case 1e-8
temp{i}='1E-8';
case 1e-7
temp{i}='1E-7';
case 1e-6
temp{i}='1E-6';
case 1e-5
temp{i}='0.00001';
case 5e-5
temp{i}='0.00005';
otherwise
format_string = sprintf('%%.%.0ff', ...
p.Results.f2_numbers_as_strings_decimal_places);
temp{i}=sprintf(format_string,f2_strings(i));
end
end
f2_strings = temp;
end
end
counter=numel(out.p_table.tests);
for f1=1:numel(f1_strings)
tag_string = sprintf('%s %s',p.Results.factor_1,f1_strings{f1});
temp_strings = pull_table_strings_from_html( ...
out.results_file_string,tag_string, ...
[8 nchoosek(numel(f2_strings),2)]);
for f2=1:nchoosek(numel(f2_strings),2)
counter=counter+1;
out.p_table.tests{counter} = sprintf('%s %s %s %s', ...
p.Results.factor_1,f1_strings{f1}, ...
temp_strings{f2,1},temp_strings{f2,2});
out.p_table.p(counter) = convert_p_string_to_number( ...
temp_strings{f2,8});
end
end
counter=numel(out.p_table.tests);
for f2=1:numel(f2_strings)
tag_string = sprintf('%s %s',p.Results.factor_2,f2_strings{f2});
temp_strings = pull_table_strings_from_html( ...
out.results_file_string,tag_string, ...
[8 nchoosek(numel(f1_strings),2)]);
for f1=1:nchoosek(numel(f1_strings),2)
counter=counter+1;
out.p_table.tests{counter} = sprintf('%s %s %s %s', ...
p.Results.factor_2,f2_strings{f2}, ...
temp_strings{f1,1},temp_strings{f1,2});
out.p_table.p(counter) = convert_p_string_to_number( ...
temp_strings{f1,8});
end
end
% Transpose structure
out.p_table.tests = out.p_table.tests';
out.p_table.p = out.p_table.p';
out.p_table = struct2table(out.p_table);
end