Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

stardist plugin does not free gpu memory #196

Open
sunyi000 opened this issue May 31, 2023 · 0 comments
Open

stardist plugin does not free gpu memory #196

sunyi000 opened this issue May 31, 2023 · 0 comments

Comments

@sunyi000
Copy link

sunyi000 commented May 31, 2023

we installed both runcellpose and runstardist plugins to cellprofiler 4.2.5
no problem running either one alone on GPU.

If we create a pipeline with runstardist module before runcellpose, we have GPU out of memory issue and as a result, the next cellpose module will run on CPU instead.

Our GPU memory is approx. 11G. It seems that the startdist module did not free gpu memory after it finishes.
I'm not sure if this is to do with how cellprofiler calls the run() method in runstardist.py.

could someone please help?
Thank you

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant