Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Field indicating isolate or environmental genome. #51

Open
donovan-h-parks opened this issue Oct 22, 2018 · 0 comments
Open

Field indicating isolate or environmental genome. #51

donovan-h-parks opened this issue Oct 22, 2018 · 0 comments
Labels
enhancement

Comments

@donovan-h-parks
Copy link
Contributor

It would be helpful to have a field indicating in a genome is an isolate or environmental genome (MAG or SAG). Ideally this field would use a controlled vocabulary of: ISOLATE, MAG, SAG.

I have a script for calculating this, but we would need to formally integrate this into the GTDB:
srv/whitlam/projects1/gtdb/release86/r86_taxonomy/derived_from_metagenomes.py
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@donovan-h-parks