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writeFenicsXML.py
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writeFenicsXML.py
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# ***************************************************************************
# * *
# * Copyright (c) 2017 - Johannes Hartung <j.hartung@gmx.net> *
# * *
# * This program is free software; you can redistribute it and/or modify *
# * it under the terms of the GNU Lesser General Public License (LGPL) *
# * as published by the Free Software Foundation; either version 2 of *
# * the License, or (at your option) any later version. *
# * for detail see the LICENCE text file. *
# * *
# * This program is distributed in the hope that it will be useful, *
# * but WITHOUT ANY WARRANTY; without even the implied warranty of *
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
# * GNU Library General Public License for more details. *
# * *
# * You should have received a copy of the GNU Library General Public *
# * License along with this program; if not, write to the Free Software *
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 *
# * USA *
# * *
# ***************************************************************************
from __future__ import print_function
__title__ = "FreeCAD Fenics XML mesh writer"
__author__ = "Johannes Hartung"
__url__ = "http://www.freecadweb.org"
## @package exportFenicsXML
# \ingroup FEM
# \brief FreeCAD Fenics Mesh XML writer for FEM workbench
from importToolsFem import get_FemMeshObjectDimension, get_FemMeshObjectElementTypes, get_MaxDimElementFromList
from xml.etree import ElementTree as ET # parsing xml files and exporting
def write_fenics_mesh_xml(fem_mesh_obj, outputfile):
"""
For the export, we only have to use the highest dimensional entities and their
vertices to be exported. (For second order elements, we have to delete the mid element nodes.)
"""
# TODO: check for second order elements (what to do? deny export or reduce element order?)
FreeCAD_to_Fenics_dict = {
"Triangle": "triangle",
"Tetra": "tetrahedron",
"Hexa": "hexahedron",
"Edge": "interval",
"Node": "point",
"Quadrangle": "quadrilateral",
"Polygon": "unknown", "Polyhedron": "unknown",
"Prism": "unknown", "Pyramid": "unknown",
}
print("Converting " + fem_mesh_obj.Label + " to fenics XML File")
print("Dimension of mesh: %d" % (get_FemMeshObjectDimension(fem_mesh_obj),))
elements_in_mesh = get_FemMeshObjectElementTypes(fem_mesh_obj)
print("Elements appearing in mesh: %s" % (str(elements_in_mesh),))
celltype_in_mesh = get_MaxDimElementFromList(elements_in_mesh)
(num_cells, cellname_fc, dim_cell) = celltype_in_mesh
cellname_fenics = FreeCAD_to_Fenics_dict[cellname_fc]
print("Celltype in mesh -> %s and its Fenics name: %s" % (str(celltype_in_mesh), cellname_fenics))
root = ET.Element("dolfin", dolfin="http://fenicsproject.org")
meshchild = ET.SubElement(root, "mesh", celltype=cellname_fenics, dim=str(dim_cell))
vertices = ET.SubElement(meshchild, "vertices", size=str(fem_mesh_obj.FemMesh.NodeCount))
for (nodeind, fc_vec) in fem_mesh_obj.FemMesh.Nodes.iteritems(): # python2
ET.SubElement(
vertices, "vertex", index=str(nodeind - 1),
# FC starts from 1, fenics starts from 0 to size-1
x=str(fc_vec[0]), y=str(fc_vec[1]), z=str(fc_vec[2]))
cells = ET.SubElement(meshchild, "cells", size=str(num_cells))
if dim_cell == 3:
fc_cells = fem_mesh_obj.FemMesh.Volumes
elif dim_cell == 2:
fc_cells = fem_mesh_obj.FemMesh.Faces
elif dim_cell == 1:
fc_cells = fem_mesh_obj.FemMesh.Edges
else:
fc_cells = ()
for (fen_ind, fc_volume_ind) in enumerate(fc_cells):
# FC starts after all other entities, fenics start from 0 to size-1
nodeindices = fem_mesh_obj.FemMesh.getElementNodes(fc_volume_ind)
cell_args = {}
for (vi, ni) in enumerate(nodeindices):
cell_args["v" + str(vi)] = str(ni - 1)
# generate as many v entries in dict as nodes are listed in cell (works only for first order elements)
ET.SubElement(cells, cellname_fenics, index=str(fen_ind), **cell_args)
ET.SubElement(meshchild, "data")
fp = open(outputfile, "w")
fp.write(ET.tostring(root))
# xml core functionality does not support pretty printing
# so the output file looks quite ugly
fp.close()